Qiangfeng Cliff Zhang
TitleCited byYear
Structure-based prediction of protein-protein interactions on a genome-wide scale
QC Zhang, D Petrey, L Deng, L Qiang, Y Shi, CA Thu, B Bisikirska, ...
Nature, 2012
4812012
Systematic discovery of Xist RNA binding proteins
C Chu, QC Zhang, ST Da Rocha, RA Flynn, M Bharadwaj, JM Calabrese, ...
Cell 161 (2), 404-416, 2015
4592015
Structural imprints in vivo decode RNA regulatory mechanisms
RC Spitale, RA Flynn, QC Zhang, P Crisalli, B Lee, JW Jung, ...
Nature 519 (7544), 486, 2015
3612015
Landscape and variation of RNA secondary structure across the human transcriptome
Y Wan, K Qu, QC Zhang, RA Flynn, O Manor, Z Ouyang, J Zhang, ...
Nature 505 (7485), 706, 2014
3522014
Extensive variation in chromatin states across humans
M Kasowski, S Kyriazopoulou-Panagiotopoulou, F Grubert, JB Zaugg, ...
Science 342 (6159), 750-752, 2013
2862013
RNA duplex map in living cells reveals higher-order transcriptome structure
Z Lu, QC Zhang, B Lee, RA Flynn, MA Smith, JT Robinson, C Davidovich, ...
Cell 165 (5), 1267-1279, 2016
2202016
PrePPI: a structure-informed database of protein–protein interactions
QC Zhang, D Petrey, JI Garzón, L Deng, B Honig
Nucleic Acids Research 41 (D1), D828-D833, 2013
1622013
Protein interface conservation across structure space
QC Zhang, D Petrey, R Norel, BH Honig
Proceedings of the National Academy of Sciences 107 (24), 10896-10901, 2010
1442010
PredUs: a web server for predicting protein interfaces using structural neighbors
QC Zhang, L Deng, M Fisher, J Guan, B Honig, D Petrey
Nucleic Acids Research 39 (suppl 2), W283, 2011
812011
Rapid evolutionary turnover underlies conserved lncRNA–genome interactions
JJ Quinn, QC Zhang, P Georgiev, IA Ilik, A Akhtar, HY Chang
Genes & development 30 (2), 191-207, 2016
742016
Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE
RA Flynn, QC Zhang, RC Spitale, B Lee, MR Mumbach, HY Chang
Nature protocols 11 (2), 273, 2016
622016
A transfer-RNA-derived small RNA regulates ribosome biogenesis
HK Kim, G Fuchs, S Wang, W Wei, Y Zhang, H Park, B Roy-Chaudhuri, ...
Nature 552 (7683), 57, 2017
612017
Critical roles of long noncoding RNAs in Drosophila spermatogenesis
K Wen, L Yang, T Xiong, C Di, D Ma, M Wu, Z Xue, X Zhang, L Long, ...
Genome research 26 (9), 1233-1244, 2016
572016
PredHS: a web server for predicting protein–protein interaction hot spots by using structural neighborhood properties
L Deng, QC Zhang, Z Chen, Y Meng, J Guan, S Zhou
Nucleic acids research 42 (W1), W290-W295, 2014
392014
Boosting prediction performance of protein–protein interaction hot spots by using structural neighborhood properties
L Deng, J Guan, X Wei, Y Yi, QC Zhang, S Zhou
Journal of Computational Biology 20 (11), 878-891, 2013
302013
RNA editing of SLC22A3 drives early tumor invasion and metastasis in familial esophageal cancer
L Fu, YR Qin, XY Ming, XB Zuo, YW Diao, LY Zhang, J Ai, BL Liu, ...
Proceedings of the National Academy of Sciences 114 (23), E4631-E4640, 2017
252017
Cryo-EM structure of human dicer and its complexes with a pre-miRNA substrate
Z Liu, J Wang, H Cheng, X Ke, L Sun, QC Zhang, HW Wang
Cell 173 (5), 1191-1203. e12, 2018
222018
RISE: a database of RNA interactome from sequencing experiments
J Gong, D Shao, K Xu, Z Lu, ZJ Lu, YT Yang, QC Zhang
Nucleic acids research 46 (D1), D194-D201, 2017
182017
Towards a “structural BLAST”: Using structural relationships to infer function
F Dey, QC Zhang, D Petrey, B Honig
Protein Science, 2013
172013
MarkUs: a server to navigate sequence–structure–function space
M Fischer, QC Zhang, F Dey, BY Chen, B Honig, D Petrey
Nucleic Acids Research 39 (suppl 2), W357, 2011
152011
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Articles 1–20