|A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers|
MA Quail, M Smith, P Coupland, TD Otto, SR Harris, TR Connor, A Bertoni, ...
BMC genomics 13 (1), 1-13, 2012
|Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins|
NJ Croucher, AJ Page, TR Connor, AJ Delaney, JA Keane, SD Bentley, ...
Nucleic acids research 43 (3), e15-e15, 2015
|Emergence and global spread of epidemic healthcare-associated Clostridium difficile|
M He, F Miyajima, P Roberts, L Ellison, DJ Pickard, MJ Martin, TR Connor, ...
Nature genetics 45 (1), 109-113, 2013
|Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health|
KE Holt, H Wertheim, RN Zadoks, S Baker, CA Whitehouse, D Dance, ...
Proceedings of the National Academy of Sciences 112 (27), E3574-E3581, 2015
|Evidence for several waves of global transmission in the seventh cholera pandemic|
A Mutreja, DW Kim, NR Thomson, TR Connor, JH Lee, S Kariuki, ...
Nature 477 (7365), 462-465, 2011
|Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice|
TD Lawley, S Clare, AW Walker, MD Stares, TR Connor, C Raisen, ...
PLoS Pathog 8 (10), e1002995, 2012
|Hierarchical and spatially explicit clustering of DNA sequences with BAPS software|
L Cheng, TR Connor, J Sirén, DM Aanensen, J Corander
Molecular biology and evolution 30 (5), 1224-1228, 2013
|Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa|
CK Okoro, RA Kingsley, TR Connor, SR Harris, CM Parry, ...
Nature genetics 44 (11), 1215-1221, 2012
|Distinguishable epidemics of multidrug-resistant Salmonella Typhimurium DT104 in different hosts|
AE Mather, SWJ Reid, DJ Maskell, J Parkhill, MC Fookes, SR Harris, ...
Science 341 (6153), 1514-1517, 2013
|Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer|
EP Murchison, OB Schulz-Trieglaff, Z Ning, LB Alexandrov, MJ Bauer, ...
Cell 148 (4), 780-791, 2012
|Detection of recombination events in bacterial genomes from large population samples|
P Marttinen, WP Hanage, NJ Croucher, TR Connor, SR Harris, ...
Nucleic acids research 40 (1), e6-e6, 2012
|Hyper-recombination, diversity, and antibiotic resistance in pneumococcus|
WP Hanage, C Fraser, J Tang, TR Connor, J Corander
Science 324 (5933), 1454-1457, 2009
|Salmonella bongori provides insights into the evolution of the Salmonellae|
M Fookes, GN Schroeder, GC Langridge, CJ Blondel, C Mammina, ...
PLoS Pathog 7 (8), e1002191, 2011
|Patterns of genome evolution that have accompanied host adaptation in Salmonella|
GC Langridge, M Fookes, TR Connor, T Feltwell, N Feasey, BN Parsons, ...
Proceedings of the National Academy of Sciences 112 (3), 863-868, 2015
|Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution|
A von Mentzer, TR Connor, LH Wieler, T Semmler, A Iguchi, NR Thomson, ...
Nature genetics 46 (12), 1321, 2014
|Whole genome sequencing reveals potential spread of Clostridium difficile between humans and farm animals in the Netherlands, 2002 to 2011|
CW Knetsch, TR Connor, A Mutreja, SM Van Dorp, IM Sanders, ...
Eurosurveillance 19 (45), 20954, 2014
|Assessing the reliability of eBURST using simulated populations with known ancestry|
KME Turner, WP Hanage, C Fraser, TR Connor, BG Spratt
BMC microbiology 7 (1), 1-14, 2007
|Parallel independent evolution of pathogenicity within the genus Yersinia|
S Reuter, TR Connor, L Barquist, D Walker, T Feltwell, SR Harris, ...
Proceedings of the National Academy of Sciences 111 (18), 6768-6773, 2014
|Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study|
KS Baker, TJ Dallman, PM Ashton, M Day, G Hughes, PD Crook, ...
The Lancet infectious diseases 15 (8), 913-921, 2015
|CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community|
TR Connor, NJ Loman, S Thompson, A Smith, J Southgate, R Poplawski, ...
Microbial genomics 2 (9), 2016