Marco Di Stefano
Marco Di Stefano
Researcher, IGH-CNRS (FR)
Verified email at - Homepage
Cited by
Cited by
Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions
DI Cattoni, AM Cardozo Gizzi, M Georgieva, M Di Stefano, A Valeri, ...
Nature communications 8 (1), 1753, 2017
Restraint-based three-dimensional modeling of genomes and genomic domains
F Serra, M Di Stefano, YG Spill, Y Cuartero, M Goodstadt, D Ba¨, ...
FEBS letters 589 (20), 2987-2995, 2015
Dynamics of genome architecture and chromatin function during human B cell differentiation and neoplastic transformation
R Vilarrasa-Blasi, P Soler-Vila, N Verdaguer-Dot, N Russi˝ol, ...
Nature communications 12 (1), 651, 2021
Active and repressed biosynthetic gene clusters have spatially distinct chromosome states
HW NŘtzmann, D Doerr, A RamÝrez-Colmenero, JE Sotelo-Fonseca, ...
Proceedings of the National Academy of Sciences 117 (24), 13800-13809, 2020
Hi-C-constrained physical models of human chromosomes recover functionally-related properties of genome organization
M Di Stefano, J Paulsen, TG Lien, E Hovig, C Micheletti
Scientific reports 6 (1), 35985, 2016
Colocalization of coregulated genes: a steered molecular dynamics study of human chromosome 19
M Di Stefano, A Rosa, V Belcastro, D di Bernardo, C Micheletti
PLoS computational biology 9 (3), e1003019, 2013
Transcriptional activation during cell reprogramming correlates with the formation of 3D open chromatin hubs
M Di Stefano, R Stadhouders, I Farabella, D Castillo, F Serra, T Graf, ...
Nature communications 11 (1), 1-12, 2020
Absence of knots in known RNA structures
C Micheletti, M Di Stefano, H Orland
Proceedings of the National Academy of Sciences 112 (7), 2052-2057, 2015
Driving knots on DNA with AC/DC electric fields: topological friction and memory effects
M Di Stefano, L Tubiana, M Di Ventra, C Micheletti
Soft Matter 10 (34), 6491-6498, 2014
4D nucleome modeling
M Di Stefano, J Paulsen, D Jost, MA Marti-Renom
Current opinion in genetics & development 67, 25-32, 2021
Spatial organization of chromosomes leads to heterogeneous chromatin motion and drives the liquid-or gel-like dynamical behavior of chromatin
H Salari, M Di Stefano, D Jost
Genome research 32 (1), 28-43, 2022
Polymer modelling unveils the roles of heterochromatin and nucleolar organizing regions in shaping 3D genome organization in Arabidopsis thaliana
M Di Stefano, HW NŘtzmann, MA Marti-Renom, D Jost
Nucleic Acids Research 49 (4), 1840-1858, 2021
Hierarchical chromatin organization detected by TADpole
P Soler-Vila, P Cusco, I Farabella, M Di Stefano, MA Marti-Renom
Nucleic acids research 48 (7), e39-e39, 2020
Three-dimensional genome organization via triplex-forming RNAs
I Farabella, M Di Stefano, P Soler-Vila, M Marti-Marimon, ...
Nature Structural & Molecular Biology 28 (11), 945-954, 2021
The elusive quest for RNA knots
AS Burton, M Di Stefano, N Lehman, H Orland, C Micheletti
RNA biology 13 (2), 134-139, 2016
Transient loss of Polycomb components induces an epigenetic cancer fate
V Parreno, V Loubiere, B Schuettengruber, L Fritsch, CC Rawal, ...
Nature, 1-9, 2024
Integrative studies of 3D genome organization and chromatin structure
M Di Stefano, G Cavalli
Current Opinion in Structural Biology 77, 102493, 2022
Electric-field-driven trapping of polyelectrolytes in needle-like backfolded states
A Suma, M Di Stefano, C Micheletti
Macromolecules 51 (12), 4462-4470, 2018
3DGenBench: a web-server to benchmark computational models for 3D Genomics
Nucleic Acids Research 50 (W1), W4-W12, 2022
Topological constraints in eukaryotic genomes and how they can be exploited to improve spatial models of chromosomes
A Rosa, M Di Stefano, C Micheletti
Frontiers in Molecular Biosciences 6, 127, 2019
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