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Denis C. Bauer
Denis C. Bauer
CSIRO eHealth - Biomedical Informatics Group - Transformational Bioinformatics Team
Verified email at csiro.au
Title
Cited by
Cited by
Year
Genome-wide analyses identify KIF5A as a novel ALS gene
A Nicolas, KP Kenna, AE Renton, N Ticozzi, F Faghri, R Chia, ...
Neuron 97 (6), 1268-1283. e6, 2018
5582018
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
Nature genetics 41 (5), 553-562, 2009
4162009
Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations
PC Taberlay, J Achinger-Kawecka, ATL Lun, FA Buske, K Sabir, ...
Genome research 26 (6), 719-731, 2016
3302016
A comparative study of techniques for differential expression analysis on RNA-Seq data
ZH Zhang, DJ Jhaveri, VM Marshall, DC Bauer, J Edson, RK Narayanan, ...
PloS one 9 (8), e103207, 2014
3162014
Triplexator: detecting nucleic acid triple helices in genomic and transcriptomic data
FA Buske, DC Bauer, JS Mattick, TL Bailey
Genome research 22 (7), 1372-1381, 2012
2112012
Assigning roles to DNA regulatory motifs using comparative genomics
FA Buske, M Bodén, DC Bauer, TL Bailey
Bioinformatics 26 (7), 860-866, 2010
1952010
Genetic correlation between amyotrophic lateral sclerosis and schizophrenia
RL McLaughlin, D Schijven, W Van Rheenen, KR Van Eijk, M O’Brien, ...
Nature communications 8 (1), 14774, 2017
1302017
The current state and future of CRISPR-Cas9 gRNA design tools
LOW Wilson, AR O’Brien, DC Bauer
Frontiers in pharmacology 9, 749, 2018
1252018
Early life events influence whole-of-life metabolic health via gut microflora and gut permeability
CA Kerr, DM Grice, CD Tran, DC Bauer, D Li, P Hendry, GN Hannan
Critical reviews in microbiology 41 (3), 326-340, 2015
1112015
Blue: correcting sequencing errors using consensus and context
P Greenfield, K Duesing, A Papanicolaou, DC Bauer
Bioinformatics 30 (19), 2723-2732, 2014
962014
Cpipe: a shared variant detection pipeline designed for diagnostic settings
SP Sadedin, H Dashnow, PA James, M Bahlo, DC Bauer, A Lonie, ...
Genome medicine 7, 1-10, 2015
922015
Evaluation of computational programs to predict HLA genotypes from genomic sequencing data
DC Bauer, A Zadoorian, LOW Wilson, ...
Briefings in bioinformatics 19 (2), 179-187, 2018
812018
Evidence for polygenic and oligogenic basis of Australian sporadic amyotrophic lateral sclerosis
EP McCann, L Henden, JA Fifita, KY Zhang, N Grima, DC Bauer, SCM Fat, ...
Journal of medical genetics 58 (2), 87-95, 2021
742021
A comparative study of multi-omics integration tools for cancer driver gene identification and tumour subtyping
A Sathyanarayanan, R Gupta, EW Thompson, DR Nyholt, DC Bauer, ...
Briefings in bioinformatics 21 (6), 1920-1936, 2020
562020
Optimized nickase-and nuclease-based prime editing in human and mouse cells
F Adikusuma, C Lushington, J Arudkumar, GI Godahewa, YCJ Chey, ...
Nucleic acids research 49 (18), 10785-10795, 2021
502021
Supporting pandemic response using genomics and bioinformatics: A case study on the emergent SARS‐CoV‐2 outbreak
DC Bauer, AP Tay, LOW Wilson, D Reti, C Hosking, AJ McAuley, E Pharo, ...
Transboundary and emerging diseases 67 (4), 1453-1462, 2020
502020
High activity target-site identification using phenotypic independent CRISPR-Cas9 core functionality
LOW Wilson, D Reti, AR O'Brien, RA Dunne, DC Bauer
The CRISPR Journal 1 (2), 182-190, 2018
492018
Gut permeability, its interaction with gut microflora and effects on metabolic health are mediated by the lymphatics system, liver and bile acid
CD Tran, DM Grice, B Wade, CA Kerr, DC Bauer, D Li, GN Hannan
Future microbiology 10 (8), 1339-1353, 2015
432015
Monozygotic twins and triplets discordant for amyotrophic lateral sclerosis display differential methylation and gene expression
IS Tarr, EP McCann, B Benyamin, TJ Peters, NA Twine, KY Zhang, ...
Scientific reports 9 (1), 8254, 2019
402019
Artificial intelligence and machine learning in bioinformatics
K Lai, N Twine, A O’brien, Y Guo, D Bauer
Encyclopedia of Bioinformatics and Computational Biology: ABC of …, 2018
402018
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