Denis C. Bauer
Denis C. Bauer
CSIRO eHealth - Biomedical Informatics Group - Transformational Bioinformatics Team
Verified email at csiro.au
Title
Cited by
Cited by
Year
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
H Suzuki, ARR Forrest, E Van Nimwegen, CO Daub, PJ Balwierz, ...
Nature genetics 41 (5), 553, 2009
4302009
A comparative study of techniques for differential expression analysis on RNA-Seq data
ZH Zhang, DJ Jhaveri, VM Marshall, DC Bauer, J Edson, RK Narayanan, ...
PloS one 9 (8), e103207, 2014
2402014
Genome-wide analyses identify KIF5A as a novel ALS gene
A Nicolas, KP Kenna, AE Renton, N Ticozzi, F Faghri, R Chia, ...
Neuron 97 (6), 1268-1283. e6, 2018
2142018
Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations
PC Taberlay, J Achinger-Kawecka, ATL Lun, FA Buske, K Sabir, ...
Genome research 26 (6), 719-731, 2016
1792016
Triplexator: detecting nucleic acid triple helices in genomic and transcriptomic data
FA Buske, DC Bauer, JS Mattick, TL Bailey
Genome research 22 (7), 1372-1381, 2012
1282012
Assigning roles to DNA regulatory motifs using comparative genomics
FA Buske, M Bodén, DC Bauer, TL Bailey
Bioinformatics 26 (7), 860-866, 2010
1182010
Early life events influence whole-of-life metabolic health via gut microflora and gut permeability
CA Kerr, DM Grice, CD Tran, DC Bauer, D Li, P Hendry, GN Hannan
Critical reviews in microbiology 41 (3), 326-340, 2015
822015
Genetic correlation between amyotrophic lateral sclerosis and schizophrenia
RL McLaughlin, D Schijven, W Van Rheenen, KR Van Eijk, M O’Brien, ...
Nature communications 8 (1), 1-12, 2017
732017
Blue: correcting sequencing errors using consensus and context
P Greenfield, K Duesing, A Papanicolaou, DC Bauer
Bioinformatics 30 (19), 2723-2732, 2014
672014
Cpipe: a shared variant detection pipeline designed for diagnostic settings
SP Sadedin, H Dashnow, PA James, M Bahlo, DC Bauer, A Lonie, ...
Genome medicine 7 (1), 1-10, 2015
592015
The current state and future of CRISPR-Cas9 gRNA design tools
LOW Wilson, AR O’Brien, DC Bauer
Frontiers in pharmacology 9, 749, 2018
552018
Evaluation of computational programs to predict HLA genotypes from genomic sequencing data
DC Bauer, A Zadoorian, LOW Wilson, ...
Briefings in bioinformatics 19 (2), 179-187, 2018
372018
VariantSpark: population scale clustering of genotype information
AR O’Brien, NFW Saunders, Y Guo, FA Buske, RJ Scott, DC Bauer
BMC genomics 16 (1), 1052, 2015
322015
Gut permeability, its interaction with gut microflora and effects on metabolic health are mediated by the lymphatics system, liver and bile acid
CD Tran, DM Grice, B Wade, CA Kerr, DC Bauer, D Li, GN Hannan
Future microbiology 10 (8), 1339-1353, 2015
252015
Adenosine monophosphate deaminase 3 activation shortens erythrocyte half-life and provides malaria resistance in mice
E Hortle, B Nijagal, DC Bauer, LM Jensen, SB Ahn, IA Cockburn, ...
Blood, The Journal of the American Society of Hematology 128 (9), 1290-1301, 2016
242016
Genomics and personalised whole-of-life healthcare
DC Bauer, C Gaff, ME Dinger, M Caramins, FA Buske, M Fenech, ...
Trends in molecular medicine 20 (9), 479-486, 2014
232014
NGSANE: a lightweight production informatics framework for high-throughput data analysis
FA Buske, HJ French, MA Smith, SJ Clark, DC Bauer
Bioinformatics 30 (10), 1471-1472, 2014
222014
High activity target-site identification using phenotypic independent CRISPR-Cas9 core functionality
LOW Wilson, D Reti, AR O'Brien, RA Dunne, DC Bauer
The CRISPR Journal 1 (2), 182-190, 2018
212018
Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci
FA Buske, DC Bauer, JS Mattick, TL Bailey
Bioinformatics 29 (15), 1895-1897, 2013
212013
Targeted next‐generation sequencing of 22 mismatch repair genes identifies Lynch syndrome families
BA Talseth‐Palmer, DC Bauer, W Sjursen, TJ Evans, M McPhillips, ...
Cancer medicine 5 (5), 929-941, 2016
202016
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