Kevin J. Liu
Kevin J. Liu
Assistant Professor, Department of Computer Science and Engineering, Michigan State University
Verified email at msu.edu - Homepage
Title
Cited by
Cited by
Year
Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees
K Liu, S Raghavan, S Nelesen, CR Linder, T Warnow
Science 324 (5934), 1561-1564, 2009
3962009
SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees
K Liu, TJ Warnow, MT Holder, SM Nelesen, J Yu, AP Stamatakis, ...
Systematic biology 61 (1), 90, 2012
3462012
RAxML and FastTree: comparing two methods for large-scale maximum likelihood phylogeny estimation
K Liu, CR Linder, T Warnow
PloS one 6 (11), e27731, 2011
1932011
Maximum likelihood inference of reticulate evolutionary histories
Y Yu, J Dong, KJ Liu, L Nakhleh
Proceedings of the National Academy of Sciences 111 (46), 16448-16453, 2014
1782014
Interspecific introgressive origin of genomic diversity in the house mouse
KJ Liu, E Steinberg, A Yozzo, Y Song, MH Kohn, L Nakhleh
Proceedings of the National Academy of Sciences 112 (1), 196-201, 2015
742015
Multiple sequence alignment: a major challenge to large-scale phylogenetics
K Liu, CR Linder, T Warnow
PLoS currents 2, 2010
722010
An HMM-based comparative genomic framework for detecting introgression in eukaryotes
KJ Liu, J Dai, K Truong, Y Song, MH Kohn, L Nakhleh
PLoS Comput Biol 10 (6), e1003649, 2014
522014
DACTAL: divide-and-conquer trees (almost) without alignments
S Nelesen, K Liu, LS Wang, CR Linder, T Warnow
Bioinformatics 28 (12), i274-i282, 2012
462012
The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analyses
S Nelesen, K Liu, D Zhao, CR Linder, T Warnow
Biocomputing 2008, 25-36, 2008
432008
Barking up the wrong treelength: the impact of gap penalty on alignment and tree accuracy
K Liu, S Nelesen, S Raghavan, CR Linder, T Warnow
IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (1), 7-21, 2008
392008
Tunable topological charge vortex microlaser
Z Zhang, X Qiao, B Midya, K Liu, J Sun, T Wu, W Liu, R Agarwal, ...
Science 368 (6492), 760-763, 2020
382020
HTCC as a Polymeric Inhibitor of SARS-CoV-2 and MERS-CoV
A Milewska, Y Chi, A Szczepanski, E Barreto-Duran, A Dabrowska, ...
Journal of Virology 95 (4), e01622-20, 2020
242020
A scalability study of phylogenetic network inference methods using empirical datasets and simulations involving a single reticulation
HA Hejase, KJ Liu
BMC bioinformatics 17 (1), 1-12, 2016
192016
Large-scale multiple sequence alignment and tree estimation using SATé
K Liu, T Warnow
Multiple Sequence Alignment Methods, 219-244, 2014
172014
Treelength optimization for phylogeny estimation
K Liu, T Warnow
PloS one 7 (3), e33104, 2012
102012
Fastnet: fast and accurate statistical inference of phylogenetic networks using large-scale genomic sequence data
HA Hejase, N VandePol, GM Bonito, KJ Liu
RECOMB International conference on Comparative Genomics, 242-259, 2018
72018
A performance study of the impact of recombination on species tree analysis
Z Wang, KJ Liu
BMC genomics 17 (10), 165-174, 2016
62016
Benchmark datasets and software for developing and testing methods for large-scale multiple sequence alignment and phylogenetic inference
CR Linder, R Suri, K Liu, T Warnow
PLoS currents 2, 2010
62010
Non-parametric and semi-parametric support estimation using SEquential RESampling random walks on biomolecular sequences
W Wang, J Smith, HA Hejase, KJ Liu
Algorithms for Molecular Biology 15, 1-15, 2020
52020
VRC34-Antibody Lineage Development Reveals How a Required Rare Mutation Shapes the Maturation of a Broad HIV-Neutralizing Lineage
CH Shen, BJ DeKosky, Y Guo, K Xu, Y Gu, D Kilam, SH Ko, R Kong, K Liu, ...
Cell host & microbe 27 (4), 531-543. e6, 2020
52020
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Articles 1–20