| Exploration, normalization, and summaries of high density oligonucleotide array probe level data RA Irizarry, B Hobbs, F Collin, YD Beazer‐Barclay, KJ Antonellis, U Scherf, ... Biostatistics 4 (2), 249-264, 2003 | 12384 | 2003 |
| A comparison of normalization methods for high density oligonucleotide array data based on variance and bias BM Bolstad, RA Irizarry, M Åstrand, TP Speed Bioinformatics 19 (2), 185-193, 2003 | 9865 | 2003 |
| Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1 RGW Verhaak, KA Hoadley, E Purdom, V Wang, Y Qi, MD Wilkerson, ... Cancer cell 17 (1), 98-110, 2010 | 7823 | 2010 |
| Comprehensive genomic characterization defines human glioblastoma genes and core pathways Cancer Genome Atlas Research Network Tissue source sites: Duke University ... Nature 455 (7216), 1061-1068, 2008 | 7323 | 2008 |
| Integrated genomic analyses of ovarian carcinoma Cancer Genome Atlas Research Network Nature 474 (7353), 609, 2011 | 6809 | 2011 |
| Summaries of Affymetrix GeneChip probe level data RA Irizarry, BM Bolstad, F Collin, LM Cope, B Hobbs, TP Speed Nucleic acids research 31 (4), e15-e15, 2003 | 5939 | 2003 |
| Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation YH Yang, S Dudoit, P Luu, DM Lin, V Peng, J Ngai, TP Speed Nucleic acids research 30 (4), e15-e15, 2002 | 4450 | 2002 |
| A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes RM Neve, K Chin, J Fridlyand, J Yeh, FL Baehner, T Fevr, L Clark, ... Cancer cell 10 (6), 515-527, 2006 | 3742 | 2006 |
| Comparison of discrimination methods for the classification of tumors using gene expression data S Dudoit, J Fridlyand, TP Speed Journal of the American statistical association 97 (457), 77-87, 2002 | 3569 | 2002 |
| On the application of probability theory to agricultural experiments. Essay on principles. Section 9. J Splawa-Neyman, DM Dabrowska, TP Speed Statistical Science, 465-472, 1990 | 2521 | 1990 |
| Normalization of cDNA microarray data GK Smyth, T Speed Methods 31 (4), 265-273, 2003 | 2325 | 2003 |
| Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments S Dudoit, YH Yang, MJ Callow, TP Speed Statistica sinica, 111-139, 2002 | 2169 | 2002 |
| Normalization of RNA-seq data using factor analysis of control genes or samples D Risso, J Ngai, TP Speed, S Dudoit Nature biotechnology 32 (9), 896-902, 2014 | 1755 | 2014 |
| GOstat: find statistically overrepresented Gene Ontologies within a group of genes T Beissbarth, TP Speed Bioinformatics 20 (9), 1464-1465, 2004 | 1479 | 2004 |
| Discrete-parameter martingales J Neveu, TP Speed (No Title), 1975 | 1465 | 1975 |
| Design issues for cDNA microarray experiments YH Yang, T Speed Nature Reviews Genetics 3 (8), 579-588, 2002 | 1117 | 2002 |
| Summarizing and correcting the GC content bias in high-throughput sequencing Y Benjamini, TP Speed Nucleic acids research 40 (10), e72-e72, 2012 | 1018 | 2012 |
| Replicated microarray data I Lönnstedt, T Speed Statistica sinica, 31-46, 2002 | 983 | 2002 |
| Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis P Savas, B Virassamy, C Ye, A Salim, CP Mintoff, F Caramia, R Salgado, ... Nature medicine 24 (7), 986-993, 2018 | 817 | 2018 |
| Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences TS Mikkelsen, MJ Wakefield, B Aken, CT Amemiya, JL Chang, S Duke, ... Nature 447 (7141), 167-177, 2007 | 774 | 2007 |
