Wout Bittremieux
Wout Bittremieux
University of California San Diego – University of Antwerp
Verified email at ucsd.edu - Homepage
TitleCited byYear
A primer to frequent itemset mining for bioinformatics
S Naulaerts, P Meysman, W Bittremieux, TN Vu, W Vanden Berghe, ...
Briefings in bioinformatics 16 (2), 216-231, 2013
792013
qcML: an exchange format for quality control metrics from mass spectrometry experiments
M Walzer, LE Pernas, S Nasso, W Bittremieux, S Nahnsen, ...
Molecular & Cellular Proteomics 13 (8), 1905-1913, 2014
432014
Machine learning applications in proteomics research: How the past can boost the future
P Kelchtermans, W Bittremieux, K De Grave, S Degroeve, J Ramon, ...
Proteomics 14 (4-5), 353-366, 2014
392014
Proteomics standards initiative: fifteen years of progress and future work
EW Deutsch, S Orchard, PA Binz, W Bittremieux, M Eisenacher, ...
Journal of proteome research 16 (12), 4288-4298, 2017
322017
Quality control in mass spectrometry‐based proteomics
W Bittremieux, DL Tabb, F Impens, A Staes, E Timmerman, L Martens, ...
Mass spectrometry reviews 37 (5), 697-711, 2018
222018
iMonDB: mass spectrometry quality control through instrument monitoring
W Bittremieux, H Willems, P Kelchtermans, L Martens, K Laukens, ...
Journal of proteome research 14 (5), 2360-2366, 2015
212015
Computational quality control tools for mass spectrometry proteomics
W Bittremieux, D Valkenborg, L Martens, K Laukens
Proteomics 17 (3-4), 1600159, 2017
182017
On the feasibility of mining CD8+ T cell receptor patterns underlying immunogenic peptide recognition
N De Neuter, W Bittremieux, C Beirnaert, B Cuypers, A Mrzic, P Moris, ...
Immunogenetics 70 (3), 159-168, 2018
122018
Unsupervised quality assessment of mass spectrometry proteomics experiments by multivariate quality control metrics
W Bittremieux, P Meysman, L Martens, D Valkenborg, K Laukens
Journal of proteome research 15 (4), 1300-1307, 2016
112016
Fast open modification spectral library searching through approximate nearest neighbor indexing
W Bittremieux, P Meysman, WS Noble, K Laukens
Journal of proteome research 17 (10), 3463-3474, 2018
102018
jqcML: an open-source java API for mass spectrometry quality control data in the qcML format
W Bittremieux, P Kelchtermans, D Valkenborg, L Martens, K Laukens
Journal of proteome research 13 (7), 3484-3487, 2014
102014
The Human Proteome Organization–Proteomics Standards Initiative Quality Control Working Group: Making Quality Control More Accessible for Biological Mass Spectrometry
W Bittremieux, M Walzer, S Tenzer, W Zhu, RM Salek, M Eisenacher, ...
Analytical chemistry 89 (8), 4474-4479, 2017
92017
Designing biomedical proteomics experiments: state-of-the-art and future perspectives
E Maes, P Kelchtermans, W Bittremieux, K De Grave, S Degroeve, ...
Expert review of proteomics 13 (5), 495-511, 2016
92016
A community proposal to integrate proteomics activities in ELIXIR
JA Vizcaíno, M Walzer, RC Jiménez, W Bittremieux, D Bouyssié, ...
F1000Research 6, 2017
72017
Efficient Reduction of Candidate Matches in Peptide Spectrum Library Searching Using the Top k Most Intense Peaks
TN Vu, W Bittremieux, D Valkenborg, B Goethals, F Lemière, K Laukens
Journal of proteome research 13 (9), 4175-4183, 2014
62014
TCRex: detection of enriched T cell epitope specificity in full T cell receptor sequence repertoires
S Gielis, P Moris, W Bittremieux, N De Neuter, B Ogunjimi, K Laukens, ...
bioRxiv, 373472, 2019
5*2019
Grasping frequent subgraph mining for bioinformatics applications
A Mrzic, P Meysman, W Bittremieux, P Moris, B Cule, B Goethals, ...
BioData mining 11 (1), 20, 2018
32018
Automated recommendation of metabolite substructures from mass spectra using frequent pattern mining
A Mrzic, P Meysman, W Bittremieux, K Laukens
bioRxiv, 134189, 2017
32017
Mining the enriched subgraphs for specific vertices in a biological graph
P Meysman, Y Saeys, E Sabaghian, W Bittremieux, Y Van de Peer, ...
IEEE/ACM transactions on computational biology and bioinformatics, 2016
32016
Discovery of significantly enriched subgraphs associated with selected vertices in a single graph
P Meysman, Y Saeys, E Sabaghian, W Bittremieux, Y Van de Peer, ...
Proceedings of the 14th International Workshop on Data Mining in …, 2015
32015
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Articles 1–20