Haim Ashkenazy
Haim Ashkenazy
Max Planck Institute for Developmental Biology
Verified email at tau.ac.il - Homepage
Title
Cited by
Cited by
Year
ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
H Ashkenazy, E Erez, E Martz, T Pupko, N Ben-Tal
Nucleic acids research 38 (suppl 2), W529-W533, 2010
16072010
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules
H Ashkenazy, S Abadi, E Martz, O Chay, I Mayrose, T Pupko, N Ben-Tal
Nucleic acids research 44 (W1), W344-W350, 2016
11942016
GUIDANCE: a web server for assessing alignment confidence scores
O Penn, E Privman, H Ashkenazy, G Landan, D Graur, T Pupko
Nucleic acids research 38 (suppl 2), W23-W28, 2010
5472010
PredictProtein—an open resource for online prediction of protein structural and functional features
G Yachdav, E Kloppmann, L Kajan, M Hecht, T Goldberg, T Hamp, ...
Nucleic acids research 42 (W1), W337-W343, 2014
5352014
GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters
I Sela, H Ashkenazy, K Katoh, T Pupko
Nucleic acids research 43 (W1), W7-W14, 2015
4632015
ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function
G Celniker, G Nimrod, H Ashkenazy, F Glaser, E Martz, I Mayrose, ...
Israel Journal of Chemistry 53 (3‐4), 199-206, 2013
4142013
FastML: a web server for probabilistic reconstruction of ancestral sequences
H Ashkenazy, O Penn, A Doron-Faigenboim, O Cohen, G Cannarozzi, ...
Nucleic Acids Research 40 (W1), W580-W584, 2012
2462012
GLOOME: gain loss mapping engine
O Cohen, H Ashkenazy, F Belinky, D Huchon, T Pupko
Bioinformatics 26 (22), 2914-2915, 2010
792010
Deep Panning: Steps towards Probing the IgOme
A Ryvkin, H Ashkenazy, L Smelyanski, G Kaplan, O Penn, ...
PLoS ONE 7 (8), e41469, 2012
522012
Protein stability: a single recorded mutation aids in predicting the effects of other mutations in the same amino acid site
G Wainreb, L Wolf, H Ashkenazy, Y Dehouck, N Ben-Tal
Bioinformatics 27 (23), 3286-3292, 2011
472011
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data
G Wainreb, H Ashkenazy, Y Bromberg, A Starovolsky-Shitrit, T Haliloglu, ...
Nucleic Acids Research 38 (suppl 2), W523-W528, 2010
442010
Peptides modulating conformational changes in secreted chaperones: from in silico design to preclinical proof of concept
Y Kliger, O Levy, A Oren, H Ashkenazy, Z Tiran, A Novik, A Rosenberg, ...
Proceedings of the National Academy of Sciences 106 (33), 13797-13801, 2009
412009
Uncovering the co-evolutionary network among prokaryotic genes
O Cohen, H Ashkenazy, D Burstein, T Pupko
Bioinformatics 28 (18), i389-i394, 2012
332012
Reducing phylogenetic bias in correlated mutation analysis
H Ashkenazy, Y Kliger
Protein Engineering Design and Selection 23 (5), 321-326, 2010
322010
Broad phylogenetic analysis of cation/proton antiporters reveals transport determinants
G Masrati, M Dwivedi, A Rimon, Y Gluck-Margolin, A Kessel, H Ashkenazy, ...
Nature Communications 9 (1), 4205, 2018
302018
Optimal data collection for correlated mutation analysis
H Ashkenazy, R Unger, Y Kliger
Proteins: Structure, Function, and Bioinformatics 74 (3), 545-555, 2009
272009
Indel reliability in indel-based phylogenetic inference
H Ashkenazy, O Cohen, T Pupko, D Huchon
Genome biology and evolution 6 (12), 3199-3209, 2014
252014
CoPAP: Coevolution of Presence–Absence Patterns
O Cohen, H Ashkenazy, E Levy Karin, D Burstein, T Pupko
Nucleic acids research 41 (W1), W232-W237, 2013
192013
ConSurf‐DB: An accessible repository for the evolutionary conservation patterns of the majority of PDB proteins
A Ben Chorin, G Masrati, A Kessel, A Narunsky, J Sprinzak, S Lahav, ...
Protein Science 29 (1), 258-267, 2020
172020
Phage display peptide libraries: deviations from randomness and correctives
A Ryvkin, H Ashkenazy, Y Weiss-Ottolenghi, C Piller, T Pupko, ...
Nucleic acids research 46 (9), e52-e52, 2018
162018
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