Seth Cheetham
Seth Cheetham
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Cited by
Cited by
Long noncoding RNAs and the genetics of cancer
SW Cheetham, F Gruhl, JS Mattick, ME Dinger
British journal of cancer 108 (12), 2419-2425, 2013
Overcoming challenges and dogmas to understand the functions of pseudogenes
SW Cheetham, GJ Faulkner, ME Dinger
Nature Reviews Genetics 21 (3), 191-201, 2020
Cell-type-specific profiling of protein–DNA interactions without cell isolation using targeted DamID with next-generation sequencing
OJ Marshall, TD Southall, SW Cheetham, AH Brand
Nature protocols 11 (9), 1586-1598, 2016
Nanopore sequencing enables comprehensive transposable element epigenomic profiling
AD Ewing, N Smits, FJ Sanchez-Luque, J Faivre, PM Brennan, ...
Molecular Cell 80 (5), 915-928. e5, 2020
LINE-1 evasion of epigenetic repression in humans
FJ Sanchez-Luque, MJHC Kempen, P Gerdes, DB Vargas-Landin, ...
Molecular cell 75 (3), 590-604. e12, 2019
Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes
DK Gascoigne, SW Cheetham, PB Cattenoz, MB Clark, PP Amaral, ...
Bioinformatics 28 (23), 3042-3050, 2012
Targeted DamID reveals differential binding of mammalian pluripotency factors
SW Cheetham, WH Gruhn, J van den Ameele, R Krautz, TD Southall, ...
Development 145 (20), dev170209, 2018
DamID as a versatile tool for understanding gene regulation
GN Aughey, SW Cheetham, TD Southall
Development 146 (6), dev173666, 2019
The Evx1/Evx1as gene locus regulates anterior-posterior patterning during gastrulation
CC Bell, PP Amaral, A Kalsbeek, GW Magor, KR Gillinder, P Tangermann, ...
Scientific reports 6 (1), 26657, 2016
Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome
RL Troskie, Y Jafrani, TR Mercer, AD Ewing, GJ Faulkner, SW Cheetham
Genome biology 22 (1), 146, 2021
RNA-DamID reveals cell-type-specific binding of roX RNAs at chromatin-entry sites
SW Cheetham, AH Brand
Nature structural & molecular biology 25 (1), 109-114, 2018
Methylartist: tools for visualizing modified bases from nanopore sequence data
SW Cheetham, M Kindlova, AD Ewing
Bioinformatics 38 (11), 3109-3112, 2022
Processed pseudogenes: a substrate for evolutionary innovation: retrotransposition contributes to genome evolution by propagating pseudogene sequences with rich regulatory …
RL Troskie, GJ Faulkner, SW Cheetham
BioEssays 43 (11), 2100186, 2021
High resolution temporal transcriptomics of mouse embryoid body development reveals complex expression dynamics of coding and noncoding loci
BS Gloss, B Signal, SW Cheetham, F Gruhl, DC Kaczorowski, AC Perkins, ...
Scientific reports 7 (1), 6731, 2017
Freedom of expression: cell‐type‐specific gene profiling
L Otsuki, SW Cheetham, AH Brand
Wiley Interdisciplinary Reviews: Developmental Biology 3 (6), 429-443, 2014
Insulin finds its niche
SW Cheetham, AH Brand
Science 340 (6134), 817-818, 2013
Single-molecule simultaneous profiling of DNA methylation and DNA-protein interactions with Nanopore-DamID
SW Cheetham, YMA Jafrani, SB Andersen, N Jansz, M Kindlova, ...
BioRxiv, 2021.08. 09.455753, 2021
Reduced chromatin accessibility correlates with resistance to Notch activation
J Van Den Ameele, R Krautz, SW Cheetham, APA Donovan, ...
Nature Communications 13 (1), 2210, 2022
Somatic retrotransposition in the developing rhesus macaque brain
V Billon, FJ Sanchez-Luque, J Rasmussen, GO Bodea, DJ Gerhardt, ...
Genome Research 32 (7), 1298-1314, 2022
In vivo targeted DamID identifies CHD8 genomic targets in fetal mouse brain
AA Wade, J Van Den Ameele, SW Cheetham, R Yakob, AH Brand, ...
Iscience 24 (11), 2021
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