eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses J Huerta-Cepas, D Szklarczyk, D Heller, A Hernández-Plaza, SK Forslund, ... Nucleic acids research 47 (D1), D309-D314, 2019 | 3154 | 2019 |
Complete nitrification by Nitrospira bacteria H Daims, EV Lebedeva, P Pjevac, P Han, C Herbold, M Albertsen, ... Nature 528 (7583), 504-509, 2015 | 2406 | 2015 |
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ... Nucleic acids research 44 (D1), D286-D293, 2016 | 1997 | 2016 |
Genome sequencing and analysis of the model grass Brachypodium distachyon DNA sequencing and assembly Barry Kerrie 5 Lucas Susan 5 Harmon-Smith ... Nature 463 (7282), 763-768, 2010 | 1922 | 2010 |
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ... Nature biotechnology 35 (8), 725-731, 2017 | 1686 | 2017 |
Deciphering the evolution and metabolism of an anammox bacterium from a community genome M Strous, E Pelletier, S Mangenot, T Rattei, A Lehner, MW Taylor, M Horn, ... Nature 440 (7085), 790-794, 2006 | 1410 | 2006 |
The dynamic genome of Hydra JA Chapman, EF Kirkness, O Simakov, SE Hampson, T Mitros, ... Nature 464 (7288), 592-596, 2010 | 894 | 2010 |
A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria S Lücker, M Wagner, F Maixner, E Pelletier, H Koch, B Vacherie, T Rattei, ... Proceedings of the National Academy of Sciences 107 (30), 13479-13484, 2010 | 798 | 2010 |
Gepard: a rapid and sensitive tool for creating dotplots on genome scale J Krumsiek, R Arnold, T Rattei Bioinformatics 23 (8), 1026-1028, 2007 | 792 | 2007 |
Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 781 | 2017 |
eggNOG v3. 0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges S Powell, D Szklarczyk, K Trachana, A Roth, M Kuhn, J Muller, R Arnold, ... Nucleic acids research 40 (D1), D284-D289, 2012 | 625 | 2012 |
eggNOG v4. 0: nested orthology inference across 3686 organisms S Powell, K Forslund, D Szklarczyk, K Trachana, A Roth, J Huerta-Cepas, ... Nucleic acids research 42 (D1), D231-D239, 2014 | 617 | 2014 |
amoA‐based consensus phylogeny of ammonia‐oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions M Pester, T Rattei, S Flechl, A Gröngröft, A Richter, J Overmann, ... Environmental microbiology 14 (2), 525-539, 2012 | 585 | 2012 |
Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota A Spang, R Hatzenpichler, C Brochier-Armanet, T Rattei, P Tischler, ... Trends in microbiology 18 (8), 331-340, 2010 | 560 | 2010 |
Illuminating the evolutionary history of chlamydiae M Horn, A Collingro, S Schmitz-Esser, CL Beier, U Purkhold, B Fartmann, ... Science 304 (5671), 728-730, 2004 | 522 | 2004 |
Minimum information about an uncultivated virus genome (MIUViG) S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ... Nature biotechnology 37 (1), 29-37, 2019 | 515 | 2019 |
Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts NS Webster, MW Taylor, F Behnam, S Lücker, T Rattei, S Whalan, M Horn, ... Environmental Microbiology 12 (8), 2070-2082, 2010 | 491 | 2010 |
MIPS: analysis and annotation of proteins from whole genomes in 2005 HW Mewes, D Frishman, KFX Mayer, M Münsterkötter, O Noubibou, ... Nucleic acids research 34 (suppl_1), D169-D172, 2006 | 428 | 2006 |
NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite‐oxidizing Nitrospira M Pester, F Maixner, D Berry, T Rattei, H Koch, S Lücker, B Nowka, ... Environmental microbiology 16 (10), 3055-3071, 2014 | 372 | 2014 |
The Prevotella copri complex comprises four distinct clades underrepresented in westernized populations A Tett, KD Huang, F Asnicar, H Fehlner-Peach, E Pasolli, N Karcher, ... Cell host & microbe 26 (5), 666-679. e7, 2019 | 355 | 2019 |