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Ragul Gowthaman
Ragul Gowthaman
Unknown affiliation
Verified email at umd.edu
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Cited by
Year
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
5502020
Natural product (−)-gossypol inhibits colon cancer cell growth by targeting RNA-binding protein Musashi-1
L Lan, C Appelman, AR Smith, J Yu, S Larsen, RT Marquez, H Liu, X Wu, ...
Molecular oncology 9 (7), 1406-1420, 2015
1302015
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
1112019
Global mapping of antibody recognition of the hepatitis C virus E2 glycoprotein: Implications for vaccine design
BG Pierce, ZY Keck, P Lau, C Fauvelle, R Gowthaman, TF Baumert, ...
Proceedings of the National Academy of Sciences 113 (45), E6946-E6954, 2016
902016
Sequence and structure signatures of cancer mutation hotspots in protein kinases
A Dixit, L Yi, R Gowthaman, A Torkamani, NJ Schork, GM Verkhivker
PloS one 4 (10), e7485, 2009
892009
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021
762021
TCR3d: The T cell receptor structural repertoire database
R Gowthaman, BG Pierce
Bioinformatics 35 (24), 5323-5325, 2019
742019
Targeting the interaction between RNA-binding protein HuR and FOXQ1 suppresses breast cancer invasion and metastasis
X Wu, G Gardashova, L Lan, S Han, C Zhong, RT Marquez, L Wei, ...
Communications biology 3 (1), 193, 2020
732020
Cellular origins and genetic landscape of cutaneous gamma delta T cell lymphomas
J Daniels, PG Doukas, MEM Escala, KG Ringbloom, DJH Shih, J Yang, ...
Nature communications 11 (1), 1806, 2020
692020
CoV3D: a database of high resolution coronavirus protein structures
R Gowthaman, JD Guest, R Yin, J Adolf-Bryfogle, WR Schief, BG Pierce
Nucleic acids research 49 (D1), D282-D287, 2021
642021
TCRmodel: high resolution modeling of T cell receptors from sequence
R Gowthaman, BG Pierce
Nucleic acids research 46 (W1), W396-W401, 2018
552018
Peptide–MHC (pMHC) binding to a human antiviral T cell receptor induces long-range allosteric communication between pMHC-and CD3-binding sites
S Rangarajan, Y He, Y Chen, MC Kerzic, B Ma, R Gowthaman, BG Pierce, ...
Journal of Biological Chemistry 293 (41), 15991-16005, 2018
522018
Structural basis for oligoclonal T cell recognition of a shared p53 cancer neoantigen
D Wu, DT Gallagher, R Gowthaman, BG Pierce, RA Mariuzza
Nature communications 11 (1), 2908, 2020
442020
Natural product derivative Gossypolone inhibits Musashi family of RNA-binding proteins
L Lan, H Liu, AR Smith, C Appelman, J Yu, S Larsen, RT Marquez, X Wu, ...
BMC cancer 18, 1-14, 2018
422018
Structural properties of non-traditional drug targets present new challenges for virtual screening
R Gowthaman, EJ Deeds, J Karanicolas
Journal of chemical information and modeling 53 (8), 2073-2081, 2013
402013
Structural assessment of HLA-A2-restricted SARS-CoV-2 spike epitopes recognized by public and private T-cell receptors
D Wu, A Kolesnikov, R Yin, JD Guest, R Gowthaman, A Shmelev, ...
Nature Communications 13 (1), 19, 2022
262022
DARC: mapping surface topography by ray-casting for effective virtual screening at protein interaction sites
R Gowthaman, SA Miller, S Rogers, J Khowsathit, L Lan, N Bai, ...
Journal of medicinal chemistry 59 (9), 4152-4170, 2016
252016
DARC 2.0: improved docking and virtual screening at protein interaction sites
R Gowthaman, S Lyskov, J Karanicolas
PLOS one 10 (7), e0131612, 2015
212015
Identification and Validation of an Aspergillus nidulans Secondary Metabolite Derivative as an Inhibitor of the Musashi-RNA Interaction
L Lan, J Liu, M Xing, AR Smith, J Wang, X Wu, C Appelman, K Li, A Roy, ...
Cancers 12 (8), 2221, 2020
172020
Geometrical characterization of T cell receptor binding modes reveals class‐specific binding to maximize access to antigen
NK Singh, ET Abualrous, CM Ayres, F Noé, R Gowthaman, BG Pierce, ...
Proteins: Structure, Function, and Bioinformatics 88 (3), 503-513, 2020
152020
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