Zheng Wang
Title
Cited by
Cited by
Year
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
7222013
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Genome Biology, 2016
2462016
NNcon: improved protein contact map prediction using 2D-recursive neural networks
AN Tegge, Z Wang, J Eickholt, J Cheng
Nucleic acids research 37 (suppl 2), W515-W518, 2009
1632009
A neural network approach to ordinal regression
J Cheng, Z Wang, G Pollastri
2008 IEEE International Joint Conference on Neural Networks (IEEE World …, 2008
1102008
SoyDB: a knowledge database of soybean transcription factors
Z Wang, M Libault, T Joshi, B Valliyodan, H Nguyen, D Xu, G Stacey, ...
BMC plant biology 10 (1), 14, 2010
1012010
Long non-coding RNAs as prognostic markers in human breast cancer
H Liu, J Li, P Koirala, X Ding, B Chen, Y Wang, Z Wang, C Wang, X Zhang, ...
Oncotarget 7 (15), 20584, 2016
942016
Evaluating the absolute quality of a single protein model using structural features and support vector machines
Z Wang, AN Tegge, J Cheng
Proteins: Structure, Function, and Bioinformatics 75 (3), 638-647, 2009
942009
MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8
Z Wang, J Eickholt, J Cheng
Bioinformatics 26 (7), 882-888, 2010
922010
SMOQ: a tool for predicting the absolute residue-specific quality of a single protein model with support vector machines
R Cao, Z Wang, Y Wang, J Cheng
BMC bioinformatics 15 (1), 120, 2014
852014
APOLLO: a quality assessment service for single and multiple protein models
Z Wang, J Eickholt, J Cheng
Bioinformatics 27 (12), 1715, 2011
772011
Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics
T Joshi, K Patil, MR Fitzpatrick, LD Franklin, Q Yao, JR Cook, Z Wang, ...
BMC genomics 13 (S1), S15, 2012
712012
Prediction of global and local quality of CASP8 models by MULTICOM series
J Cheng, Z Wang, AN Tegge, J Eickholt
Proteins: Structure, Function, and Bioinformatics 77 (S9), 181-184, 2009
662009
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
512019
Predicting DNA methylation state of CpG dinucleotide using genome topological features and deep networks
Y Wang, T Liu, D Xu, H Shi, C Zhang, YY Mo, Z Wang
Scientific reports 6, 19598, 2016
492016
Designing and evaluating the MULTICOM protein local and global model quality prediction methods in the CASP10 experiment
R Cao, Z Wang, J Cheng
BMC structural biology 14 (1), 13, 2014
422014
A Protein Domain Co-Occurrence Network Approach for Predicting Protein Function and Inferring Species Phylogeny
Z Wang, XC Zhang, MH Le, D Xu, G Stacey, J Cheng
PloS one 6 (3), e17906, 2011
412011
The MULTICOM toolbox for protein structure prediction
J Cheng, J Li, Z Wang, J Eickholt, X Deng
BMC bioinformatics 13 (1), 1-12, 2012
362012
The Properties of Genome Conformation and Spatial Gene Interaction and Regulation Networks of Normal and Malignant Human Cell Types
Z Wang, R Cao, K Taylor, A Briley, C Caldwell, J Cheng
PLOS ONE 8 (3), e58793, 2013
342013
Three-level prediction of protein function by combining profile-sequence search, profile-profile search, and domain co-occurrence networks
Z Wang, R Cao, J Cheng
BMC Bioinformatics 14 (Suppl 3), S3, 2013
332013
Benchmarking deep networks for predicting residue-specific quality of individual protein models in CASP11
T Liu, Y Wang, J Eickholt, Z Wang
Scientific reports 6, 19301, 2016
272016
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