| The behaviour and ecology of wild orang-utans (Pongo pygmaeus) J MacKinnon Animal behaviour 22 (1), 3-74, 1974 | 942 | 1974 |
| A guide to the mammals of China AT Smith, Y Xie, RS Hoffmann, D Lunde, J MacKinnon, DE Wilson, ... Princeton University Press, 2010 | 894 | 2010 |
| A field guide to the birds of China JR MacKinnon, K Phillipps Oxford University Press, 2000 | 866 | 2000 |
| A field guide to the birds of Borneo, Sumatra, Java, and Bali: the Greater Sunda Islands JR MacKinnon, K Phillipps (No Title), 1993 | 730 | 1993 |
| Managing protected areas in the tropics J MacKinnon, K MacKinnon, GS Child, J Thorsell | 685* | 1986 |
| Burung-burung di Sumatera, Jawa, Bali dan Kalimantan: termasuk Sabah, Sarawak dan Brunei Darussalam JR MacKinnon, K Phililipps, S Balen [GEF Biodiversity Collections Project], Puslitbang Biologi-LIPI [= Pusat …, 1999 | 557* | 1999 |
| Review of the Protected areas system in the Indo-Malayan realm. J MacKinnon, K MacKinnon | 374* | 1986 |
| IUCN situation analysis on East and Southeast Asian intertidal habitats, with particular reference to the Yellow Sea (including the Bohai Sea) J MacKinnon, YI Verkuil, N Murray Occasional paper of the IUCN species survival commission 47, 2012 | 315 | 2012 |
| The behavior of wild spectral tarsiers J MacKinnon, K MacKinnon International Journal of Primatology 1, 361-379, 1980 | 289 | 1980 |
| Field guide to the birds of Java and Bali JR MacKinnon (No Title), 1988 | 212 | 1988 |
| The orang-utan in Sabah today J MacKinnon Oryx 11 (2-3), 141-191, 1971 | 190 | 1971 |
| A biodiversity review of China JR MacKinnon, G Carey (No Title), 1996 | 180 | 1996 |
| Niche differentiation in a primate community JR MacKinnon, KS MacKinnon Malayan forest primates: Ten years’ study in tropical rain forest, 167-190, 1980 | 175 | 1980 |
| A new species of living bovid from Vietnam V Van Dung, PM Giao, NN Chinh, D Tuoc, P Arctander, J MacKinnon Nature 363 (6428), 443-445, 1993 | 174 | 1993 |
| Protected areas systems review of the Indo-Malayan realm JR MacKinnon Asian Bureau for Conservation, 1997 | 165 | 1997 |
| Pengelolaan kawasan yang dilindungi di daerah tropika JR MacKinnon Gadjah Mada University Press, 1990 | 164 | 1990 |
| The cutting edge: conserving wildlife in logged tropical forests RA Fimbel, J Robinson, A Grajal Columbia University Press, 2001 | 156 | 2001 |
| ape within us JR MacKinnon | 150 | 1978 |
| Seri Panduan Lapangan Burung-Burung di Sumatera, Jawa, Bali dan Kalimantan J MacKinnon, K Phillipps, B Van Balen Bogor: Lipi, 2010 | 136 | 2010 |
| Panduan lapangan pengenalan Burung-burung di Jawa dan Bali JR MacKinnon (No Title), 1990 | 119 | 1990 |
