|mixOmics: An R package for ‘omics feature selection and multiple data integration|
F Rohart, B Gautier, A Singh, KA Lê Cao
PLoS computational biology 13 (11), e1005752, 2017
|DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays|
A Singh, CP Shannon, B Gautier, F Rohart, M Vacher, SJ Tebbutt, ...
|Human hepatocellular carcinomas with a periportal phenotype have the lowest potential for early recurrence after curative resection|
R Désert, F Rohart, F Canal, M Sicard, M Desille, S Renaud, B Turlin, ...
Hepatology 66 (5), 1502-1518, 2017
|YuGene: A simple approach to scale gene expression data derived from different platforms for integrated analyses|
KA Lê Cao, F Rohart, L McHugh, O Korn, CA Wells
Genomics 103 (4), 239-251, 2014
|DIABLO: from multi-omics assays to biomarker discovery, an integrative approach|
A Singh, B Gautier, CP Shannon, F Rohart, M Vacher, SJ Tebutt, ...
bioRxiv, 067611, 2018
|MINT: A multivariate integrative method to identify reproducible molecular signatures across independent experiments and platforms|
F Rohart, A Eslami, N Matigian, S Bougeard, KA Le Cao
BMC bioinformatics 18 (1), 128, 2017
|Phenotypic prediction based on metabolomic data for growing pigs from three main European breeds|
F Rohart, A Paris, B Laurent, C Canlet, J Molina, MJ Mercat, T Tribout, ...
Journal of animal science 90 (13), 4729-4740, 2012
|A Molecular Classification of Human Mesenchymal Stromal Cells|
F Rohart, E Mason, N Matigian, R Mosbergen, O Korn, T Chen, S Butcher, ...
PeerJ 4 (e1845), 2016
|mixOmics: omics data integration project|
S Dejean, I Gonzalez, KA Lê Cao, P Monget, J Coquery, F Yao, B Liquet, ...
R package, 2013
|Selection of fixed effects in high dimensional linear mixed models using a multicycle ECM algorithm|
F Rohart, M San Cristobal, B Laurent
Computational Statistics & Data Analysis 80, 209-222, 2014
|Disease surveillance based on Internet-based linear models: an Australian case study of previously unmodeled infection diseases|
F Rohart, GJ Milinovich, SMR Avril, KA Lê Cao, S Tong, W Hu
Scientific reports 6, 38522, 2016
|Multiple hypotheses testing for variable selection|
Australian & New Zealand Journal of Statistics 58 (doi: 10.1111/anzs.12157 …, 2016
|Integrating multi-omics data to dissect mechanisms of DNA repair dysregulation in breast cancer|
KA Liu, Chao, Rohart, Florian, Simpson, Peter T., Khanna, Kum Kum, Ragan ...
Scientific Reports 6 (doi:10.1038/srep34000), 34000.1-34000.11, 2016
|Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds|
M SanCristobal, F Rohart, C Lascor, M Bouffaud, L Trouilh, PGP Martin, ...
BMC genomics 16 (1), 1055, 2015
|Phenotypic diversity spanning the spectrum of hepatocyte differentiation impacts the outcome of patients with beta-catenin-mutated hepatocellular carcinomas.|
R Desert, C Reynes, R Sabatier, D Gregoire, F Rohart, A Corlu, F Canal, ...
Hepatology 66 (Supp. 1), 129A-129A, 2017