Controlled vocabularies and semantics in systems biology M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ... Molecular systems biology 7 (1), 543, 2011 | 253 | 2011 |
SABIO-RK—database for biochemical reaction kinetics U Wittig, R Kania, M Golebiewski, M Rey, L Shi, L Jong, E Algaa, ... Nucleic acids research 40 (D1), D790-D796, 2012 | 204 | 2012 |
Path2Models: large-scale generation of computational models from biochemical pathway maps F Büchel, N Rodriguez, N Swainston, C Wrzodek, T Czauderna, R Keller, ... BMC systems biology 7 (1), 1-19, 2013 | 132 | 2013 |
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ... BMC bioinformatics 15 (1), 1-9, 2014 | 79 | 2014 |
SABIO-RK: integration and curation of reaction kinetics data U Wittig, M Golebiewski, R Kania, O Krebs, S Mir, A Weidemann, ... International Workshop on Data Integration in the Life Sciences, 94-103, 2006 | 77 | 2006 |
SEEK: a systems biology data and model management platform K Wolstencroft, S Owen, O Krebs, Q Nguyen, NJ Stanford, M Golebiewski, ... BMC systems biology 9 (1), 1-12, 2015 | 75 | 2015 |
FAIRDOMHub: a repository and collaboration environment for sharing systems biology research K Wolstencroft, O Krebs, JL Snoep, NJ Stanford, F Bacall, M Golebiewski, ... Nucleic acids research 45 (D1), D404-D407, 2017 | 54 | 2017 |
Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative M Hucka, DP Nickerson, GD Bader, FT Bergmann, J Cooper, E Demir, ... Frontiers in bioengineering and biotechnology 3, 19, 2015 | 53 | 2015 |
Storing and annotating of kinetic data I Rojas, M Golebiewski, R Kania, O Krebs, S Mir, A Weidemann, U Wittig In silico biology 7 (2 Supplement), 37-44, 2007 | 48 | 2007 |
The evolution of standards and data management practices in systems biology NJ Stanford, K Wolstencroft, M Golebiewski, R Kania, N Juty, C Tomlinson, ... Molecular systems biology 11 (12), 851, 2015 | 34 | 2015 |
SBML2LaTEX: Conversion of SBML files into human-readable reports A Dräger, H Planatscher, D Motsou Wouamba, A Schröder, M Hucka, ... Bioinformatics 25 (11), 1455-1456, 2009 | 34 | 2009 |
Enzyme kinetics informatics: from instrument to browser N Swainston, M Golebiewski, HL Messiha, N Malys, R Kania, S Kengne, ... The FEBS journal 277 (18), 3769-3779, 2010 | 27 | 2010 |
SABIO-RK: a database for biochemical reactions and their kinetics I Rojas, M Golebiewski, R Kania, O Krebs, S Mir, A Weidemann, U Wittig BMC Systems Biology 1 (1), 1-2, 2007 | 27 | 2007 |
Harmonizing semantic annotations for computational models in biology ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ... Briefings in bioinformatics 20 (2), 540-550, 2019 | 25 | 2019 |
Meeting report from the fourth meeting of the computational modeling in biology network (COMBINE) D Waltemath, FT Bergmann, C Chaouiya, T Czauderna, P Gleeson, ... Standards in genomic sciences 9 (3), 1285-1301, 2014 | 25 | 2014 |
Specifications of standards in systems and synthetic biology F Schreiber, GD Bader, M Golebiewski, M Hucka, B Kormeier, ... Journal of integrative bioinformatics 12 (2), 1-3, 2015 | 19 | 2015 |
The Human Physiome: how standards, software and innovative service infrastructures are providing the building blocks to make it achievable D Nickerson, K Atalag, B De Bono, J Geiger, C Goble, S Hollmann, ... Interface Focus 6 (2), 20150103, 2016 | 17 | 2016 |
Challenges for an enzymatic reaction kinetics database U Wittig, M Rey, R Kania, M Bittkowski, L Shi, M Golebiewski, ... The FEBS journal 281 (2), 572-582, 2014 | 16 | 2014 |
SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 15 | 2020 |
SABIO-RK: A data warehouse for biochemical reactions and their kinetics O Krebs, M Golebiewski, R Kania, S Mir, J Saric, A Weidemann, U Wittig, ... Journal of Integrative Bioinformatics 4 (1), 22-30, 2007 | 15 | 2007 |