| Clinker & clustermap. js: Automatic generation of gene cluster comparison figures CLM Gilchrist, YH Chooi Bioinformatics 37 (16), 2473-2475, 2021 | 556 | 2021 |
| Fast and accurate protein structure search with Foldseek M Van Kempen, SS Kim, C Tumescheit, M Mirdita, J Lee, CLM Gilchrist, ... Nature Biotechnology 42 (2), 243-246, 2024 | 499* | 2024 |
| Fungal Planet description sheets: 1042–1111 PW Crous, MJ Wingfield, YH Chooi, CLM Gilchrist, E Lacey, JI Pitt, ... Persoonia: Molecular Phylogeny and Evolution of Fungi 44, 301, 2020 | 142 | 2020 |
| Cblaster: a remote search tool for rapid identification and visualization of homologous gene clusters CLM Gilchrist, TJ Booth, B van Wersch, L van Grieken, MH Medema, ... Bioinformatics Advances 1 (1), vbab016, 2021 | 99 | 2021 |
| Clustering predicted structures at the scale of the known protein universe I Barrio-Hernandez, J Yeo, J Jänes, M Mirdita, CLM Gilchrist, T Wein, ... Nature 622 (7983), 637-645, 2023 | 69 | 2023 |
| Discovery and heterologous biosynthesis of the burnettramic acids: rare PKS-NRPS-derived bolaamphiphilic pyrrolizidinediones from an Australian fungus, Aspergillus burnettii H Li, CLM Gilchrist, HJ Lacey, A Crombie, D Vuong, JI Pitt, E Lacey, ... Organic letters 21 (5), 1287-1291, 2019 | 55 | 2019 |
| CRISPR-mediated activation of biosynthetic gene clusters for bioactive molecule discovery in filamentous fungi I Roux, C Woodcraft, J Hu, R Wolters, CLM Gilchrist, YH Chooi ACS synthetic biology 9 (7), 1843-1854, 2020 | 54 | 2020 |
| Victorin, the host-selective cyclic peptide toxin from the oat pathogen Cochliobolus victoriae, is ribosomally encoded SC Kessler, X Zhang, MC McDonald, CLM Gilchrist, Z Lin, A Rightmyer, ... Proceedings of the National Academy of Sciences 117 (39), 24243-24250, 2020 | 44 | 2020 |
| Biosynthesis of a New Benzazepine Alkaloid Nanangelenin A from Aspergillus nanangensis Involves an Unusual l-Kynurenine-Incorporating NRPS Catalyzing … H Li, CLM Gilchrist, CS Phan, HJ Lacey, D Vuong, SA Moggach, E Lacey, ... Journal of the American Chemical Society 142 (15), 7145-7152, 2020 | 35 | 2020 |
| Panning for gold in mould: can we increase the odds for fungal genome mining? CLM Gilchrist, H Li, YH Chooi Organic & Biomolecular Chemistry 16 (10), 1620-1626, 2018 | 25 | 2018 |
| Hancockiamides: phenylpropanoid piperazines from Aspergillus hancockii are biosynthesised by a versatile dual single-module NRPS pathway H Li, AE Lacey, S Shu, JA Kalaitzis, D Vuong, A Crombie, J Hu, ... Organic & Biomolecular Chemistry 19 (3), 587-595, 2021 | 24 | 2021 |
| Comprehensive chemotaxonomic and genomic profiling of a biosynthetically talented Australian fungus, Aspergillus burnettii sp. nov. CLM Gilchrist, HJ Lacey, D Vuong, JI Pitt, L Lange, E Lacey, B Pilgaard, ... Fungal Genetics and Biology 143, 103435, 2020 | 21 | 2020 |
| Sö ding, J., and Steinegger, M.(2023). Fast and accurate protein structure search with Foldseek M Van Kempen, SS Kim, C Tumescheit, M Mirdita, J Lee, CLM Gilchrist Nat. Biotechnol. https://doi. org/10.1038/s41587-023-01773-0, 0 | 21 | |
| Nanangenines: drimane sesquiterpenoids as the dominant metabolite cohort of a novel Australian fungus, Aspergillus nanangensis HJ Lacey, CLM Gilchrist, A Crombie, JA Kalaitzis, D Vuong, PJ Rutledge, ... Beilstein Journal of Organic Chemistry 15 (1), 2631-2643, 2019 | 20 | 2019 |
| CAGECAT: The CompArative GEne Cluster Analysis Toolbox for rapid search and visualisation of homologous gene clusters M van den Belt, C Gilchrist, TJ Booth, YH Chooi, MH Medema, M Alanjary BMC bioinformatics 24 (1), 181, 2023 | 18 | 2023 |
| FoldSeek: fast and accurate protein structure search. bioRxiv (2022) M Van Kempen, SS Kim, C Tumescheit, M Mirdita, J Söding, M Steinegger URL https://www. biorxiv. org/content/early/2022/02/09/2022.02 7, 0 | 9 | |
| UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi D Kim, CLM Gilchrist, J Chun, M Steinegger Nucleic Acids Research 51 (D1), D777-D784, 2023 | 8 | 2023 |
| Synthaser: A CD-Search enabled Python toolkit for analysing domain architecture of fungal secondary metabolite megasynth (et) ases CLM Gilchrist, YH Chooi Fungal Biology and Biotechnology 8, 1-19, 2021 | 8 | 2021 |
| Clustering predicted structures at the scale of the known protein universe M Steinegger, P Beltrao, S Velankar, M Varadi, T Wein, C Gilchrist, ... | 1 | 2023 |
| Rapid and Sensitive Protein Complex Alignment with Foldseek-Multimer W Kim, M Mirdita, EL Karin, CLM Gilchrist, H Schweke, J Soeding, E Levy, ... bioRxiv, 2024.04. 14.589414, 2024 | | 2024 |
Yit-Heng ChooiARC Future Fellow, School of Molecular Sciences, University of Western AustraliaVerified email at uwa.edu.au
