| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 14183 | 2019 |
| Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing NA Bokulich, S Subramanian, JJ Faith, D Gevers, JI Gordon, R Knight, ... Nature methods 10 (1), 57-59, 2013 | 3743 | 2013 |
| Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ... Microbiome 6, 1-17, 2018 | 3634 | 2018 |
| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 2186 | 2017 |
| Antibiotics, birth mode, and diet shape microbiome maturation during early life NA Bokulich, J Chung, T Battaglia, N Henderson, M Jay, H Li, A D. Lieber, ... Science translational medicine 8 (343), 343ra82-343ra82, 2016 | 1330 | 2016 |
| Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer MG Dominguez-Bello, KM De Jesus-Laboy, N Shen, LM Cox, A Amir, ... Nature medicine 22 (3), 250-253, 2016 | 1038 | 2016 |
| Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate NA Bokulich, JH Thorngate, PM Richardson, DA Mills Proceedings of the National Academy of Sciences 111 (1), E139-E148, 2014 | 945 | 2014 |
| The soil microbiome influences grapevine-associated microbiota I Zarraonaindia, SM Owens, P Weisenhorn, K West, J Hampton-Marcell, ... MBio 6 (2), 10.1128/mbio. 02527-14, 2015 | 774 | 2015 |
| Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities NA Bokulich, DA Mills Applied and environmental microbiology 79 (8), 2519-2526, 2013 | 486 | 2013 |
| The microbiology of malting and brewing NA Bokulich, CW Bamforth Microbiology and Molecular Biology Reviews 77 (2), 157-172, 2013 | 432 | 2013 |
| RESCRIPt: Reproducible sequence taxonomy reference database management MS Robeson, DR O’Rourke, BD Kaehler, M Ziemski, MR Dillon, JT Foster, ... PLoS computational biology 17 (11), e1009581, 2021 | 391 | 2021 |
| Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment YR Nobel, LM Cox, FF Kirigin, NA Bokulich, S Yamanishi, I Teitler, ... Nature communications 6 (1), 7486, 2015 | 372 | 2015 |
| Associations among wine grape microbiome, metabolome, and fermentation behavior suggest microbial contribution to regional wine characteristics NA Bokulich, TS Collins, C Masarweh, G Allen, H Heymann, SE Ebeler, ... MBio 7 (3), 10.1128/mbio. 00631-16, 2016 | 362 | 2016 |
| Facility-specific “house” microbiome drives microbial landscapes of artisan cheesemaking plants NA Bokulich, DA Mills Applied and environmental microbiology 79 (17), 5214-5223, 2013 | 281 | 2013 |
| Next-generation sequencing reveals significant bacterial diversity of botrytized wine NA Bokulich, CML Joseph, G Allen, AK Benson, DA Mills PloS one 7 (5), e36357, 2012 | 272 | 2012 |
| QIIME 2 enables comprehensive end‐to‐end analysis of diverse microbiome data and comparative studies with publicly available data M Estaki, L Jiang, NA Bokulich, D McDonald, A González, T Kosciolek, ... Current protocols in bioinformatics 70 (1), e100, 2020 | 261 | 2020 |
| Learning representations of microbe–metabolite interactions JT Morton, AA Aksenov, LF Nothias, JR Foulds, RA Quinn, MH Badri, ... Nature methods 16 (12), 1306-1314, 2019 | 234 | 2019 |
| Brewhouse-resident microbiota are responsible for multi-stage fermentation of American coolship ale NA Bokulich, CW Bamforth, DA Mills PloS one 7 (4), e35507, 2012 | 227 | 2012 |
| Human milk glycomics and gut microbial genomics in infant feces show a correlation between human milk oligosaccharides and gut microbiota: a proof-of-concept study MLA De Leoz, KM Kalanetra, NA Bokulich, JS Strum, MA Underwood, ... Journal of proteome research 14 (1), 491-502, 2015 | 214 | 2015 |
| q2-longitudinal: longitudinal and paired-sample analyses of microbiome data NA Bokulich, MR Dillon, Y Zhang, JR Rideout, E Bolyen, H Li, PS Albert, ... MSystems 3 (6), 10.1128/msystems. 00219-18, 2018 | 205 | 2018 |
J Gregory CaporasoNorthern Arizona UniversityVerified email at nau.edu
