|The properties of high-dimensional data spaces: implications for exploring gene and protein expression data|
R Clarke, HW Ressom, A Wang, J Xuan, MC Liu, EA Gehan, Y Wang
Nature Reviews Cancer 8 (1), 37-49, 2008
|Nuclear envelope dystrophies show a transcriptional fingerprint suggesting disruption of Rb–MyoD pathways in muscle regeneration|
M Bakay, Z Wang, G Melcon, L Schiltz, J Xuan, P Zhao, V Sartorelli, J Seo, ...
Brain 129 (4), 996-1013, 2006
|Endoplasmic reticulum stress, the unfolded protein response, autophagy, and the integrated regulation of breast cancer cell fate|
R Clarke, KL Cook, R Hu, COB Facey, I Tavassoly, JL Schwartz, ...
Cancer research 72 (6), 1321-1331, 2012
|Differential dependency network analysis to identify condition-specific topological changes in biological networks|
B Zhang, H Li, RB Riggins, M Zhan, J Xuan, Z Zhang, EP Hoffman, ...
Bioinformatics 25 (4), 526-532, 2009
|Asynchronous remodeling is a driver of failed regeneration in Duchenne muscular dystrophy|
S Dadgar, Z Wang, H Johnston, A Kesari, K Nagaraju, YW Chen, DA Hill, ...
The Journal of cell biology 207 (1), 139-158, 2014
|ERRγ mediates tamoxifen resistance in novel models of invasive lobular breast cancer|
RB Riggins, JPJ Lan, U Klimach, A Zwart, LR Cavalli, BR Haddad, L Chen, ...
Cancer research 68 (21), 8908-8917, 2008
|Segmentation of magnetic resonance brain image: integrating region growing and edge detection|
J Xuan, T Adali, Y Wang
Image Processing, 1995. Proceedings., International Conference on 3, 544-547, 1995
|Identifying cancer biomarkers by network-constrained support vector machines|
L Chen, J Xuan, R Riggins, R Clarke, Y Wang
BMC systems biology 5 (1), 161, 2011
|Classification algorithms for phenotype prediction in genomics and proteomics|
HW Ressom, RS Varghese, Z Zhang, J Xuan, R Clarke
Frontiers in bioscience: a journal and virtual library 13, 691, 2008
|Gene network signaling in hormone responsiveness modifies apoptosis and autophagy in breast cancer cells|
R Clarke, AN Shajahan, RB Riggins, Y Cho, A Crawford, J Xuan, Y Wang, ...
The Journal of steroid biochemistry and molecular biology 114 (1), 8-20, 2009
|Distinct DNA methylation profiles in ovarian serous neoplasms and their implications in ovarian carcinogenesis|
IM Shih, L Chen, CC Wang, J Gu, B Davidson, L Cope, RJ Kurman, ...
American journal of obstetrics and gynecology 203 (6), 584. e1-584. e22, 2010
|Multi-level ground glass nodule detection and segmentation in CT lung images|
Y Tao, L Lu, M Dewan, AY Chen, J Corso, J Xuan, M Salganicoff, ...
International Conference on Medical Image Computing and Computer-Assisted …, 2009
|UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples|
N Wang, T Gong, R Clarke, L Chen, IM Shih, Z Zhang, DA Levine, J Xuan, ...
Bioinformatics 31 (1), 137-139, 2015
|Defining NOTCH3 target genes in ovarian cancer|
X Chen, MM Thiaville, L Chen, A Stoeck, J Xuan, M Gao, IM Shih, ...
Cancer research 72 (9), 2294-2303, 2012
|Inferring regulatory networks|
H Li, J Xuan, Y Wang, M Zhan
Front Biosci 13 (263), 75, 2008
|Magnetic resonance image analysis by information theoretic criteria and stochastic site models|
Y Wang, T Adali, J Xuan, Z Szabo
IEEE Transactions on Information Technology in Biomedicine 5 (2), 150-158, 2001
|Endoplasmic reticulum stress, the unfolded protein response, and gene network modeling in antiestrogen resistant breast cancer|
R Clarke, AN Shajahan, Y Wang, JJ Tyson, RB Riggins, LM Weiner, ...
Hormone Molecular Biology and Clinical Investigation 5 (1), 35-44, 2011
|DDN: a caBIG® analytical tool for differential network analysis|
B Zhang, Y Tian, L Jin, H Li, IM Shih, S Madhavan, R Clarke, EP Hoffman, ...
Bioinformatics 27 (7), 1036-1038, 2011
|Mevalonate Pathway Antagonist Suppresses Formation of Serous Tubal Intraepithelial Carcinoma and Ovarian Carcinoma in Mouse Models|
Y Kobayashi, H Kashima, RC Wu, JG Jung, JC Kuan, J Gu, J Xuan, ...
Clinical Cancer Research 21 (20), 4652-4662, 2015
|Identifying protein interaction subnetworks by a bagging Markov random field-based method|
L Chen, J Xuan, RB Riggins, Y Wang, R Clarke
Nucleic acids research 41 (2), e42-e42, 2013