Eric Nawrocki
Eric Nawrocki
National Center for Biotechnology (NCBI), NLM, NIH
Verified email at ncbi.nlm.nih.gov
TitleCited byYear
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ...
The ISME journal 6 (3), 610, 2012
27102012
Infernal 1.0: inference of RNA alignments
EP Nawrocki, DL Kolbe, SR Eddy
Bioinformatics 25 (10), 1335-1337, 2009
11372009
NCBI prokaryotic genome annotation pipeline
T Tatusova, M DiCuccio, A Badretdin, V Chetvernin, EP Nawrocki, ...
Nucleic acids research 44 (14), 6614-6624, 2016
10722016
Infernal 1.1: 100-fold faster RNA homology searches
EP Nawrocki, SR Eddy
Bioinformatics 29 (22), 2933-2935, 2013
8182013
Rfam: updates to the RNA families database
PP Gardner, J Daub, JG Tate, EP Nawrocki, DL Kolbe, S Lindgreen, ...
Nucleic acids research 37 (suppl_1), D136-D140, 2008
7612008
Rfam 11.0: 10 years of RNA families
SW Burge, J Daub, R Eberhardt, J Tate, L Barquist, EP Nawrocki, ...
Nucleic acids research 41 (D1), D226-D232, 2012
7012012
Rfam 12.0: updates to the RNA families database
EP Nawrocki, SW Burge, A Bateman, J Daub, RY Eberhardt, SR Eddy, ...
Nucleic acids research 43 (D1), D130-D137, 2014
6652014
Rfam: Wikipedia, clans and the “decimal” release
PP Gardner, J Daub, J Tate, BL Moore, IH Osuch, S Griffiths-Jones, ...
Nucleic acids research 39 (suppl_1), D141-D145, 2010
4172010
Query-dependent banding (QDB) for faster RNA similarity searches
EP Nawrocki, SR Eddy
PLoS computational biology 3 (3), e56, 2007
3012007
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
I Kalvari, J Argasinska, N Quinones-Olvera, EP Nawrocki, E Rivas, ...
Nucleic acids research 46 (D1), D335-D342, 2017
2112017
Integrating membrane transport with male gametophyte development and function through transcriptomics
KW Bock, D Honys, JM Ward, S Padmanaban, EP Nawrocki, KD Hirschi, ...
Plant Physiology 140 (4), 1151-1168, 2006
1552006
Structural RNA homology search and alignment using covariance models
E Nawrocki
1512009
RNIE: genome-wide prediction of bacterial intrinsic terminators
PP Gardner, L Barquist, A Bateman, EP Nawrocki, Z Weinberg
Nucleic acids research 39 (14), 5845-5852, 2011
542011
Virus Variation Resource–improved response to emergent viral outbreaks
EL Hatcher, SA Zhdanov, Y Bao, O Blinkova, EP Nawrocki, Y Ostapchuck, ...
Nucleic acids research 45 (D1), D482-D490, 2016
452016
Annotating functional RNAs in genomes using Infernal
EP Nawrocki
RNA Sequence, Structure, and Function: Computational and Bioinformatic …, 2014
392014
Computational identification of functional RNA homologs in metagenomic data
EP Nawrocki, SR Eddy
RNA biology 10 (7), 1170-1179, 2013
282013
Non‐Coding RNA Analysis Using the Rfam Database
I Kalvari, EP Nawrocki, J Argasinska, N Quinones‐Olvera, RD Finn, ...
Current protocols in bioinformatics 62 (1), e51, 2018
242018
Identification and Characterization of a Class of MALAT1-like Genomic Loci
B Zhang, YS Mao, SD Diermeier, IV Novikova, EP Nawrocki, TA Jones, ...
Cell reports 19 (8), 1723-1738, 2017
222017
RNAcentral: a hub of information for non-coding RNA sequences
Nucleic acids research 47 (D1), D221-D229, 2018
122018
ssu-align: a tool for structural alignment of SSU rRNA sequences
EP Nawrocki, SR Eddy
URL h ttp://selab. janelia. org/software. html, 2010
102010
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Articles 1–20