Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature methods 17 (7), 665-680, 2020 | 568 | 2020 |
NMR structure of the cathelicidin-derived human antimicrobial peptide LL-37 in dodecylphosphocholine micelles F Porcelli, R Verardi, L Shi, KA Henzler-Wildman, A Ramamoorthy, ... Biochemistry 47 (20), 5565-5572, 2008 | 210 | 2008 |
Structure and topology of monomeric phospholamban in lipid membranes determined by a hybrid solution and solid-state NMR approach NJ Traaseth, L Shi, R Verardi, DG Mullen, G Barany, G Veglia Proceedings of the National Academy of Sciences 106 (25), 10165-10170, 2009 | 199 | 2009 |
Structural topology of phospholamban pentamer in lipid bilayers by a hybrid solution and solid-state NMR method R Verardi, L Shi, NJ Traaseth, N Walsh, G Veglia Proceedings of the National Academy of Sciences 108 (22), 9101-9106, 2011 | 185 | 2011 |
Structural and Dynamic Basis of Phospholamban and Sarcolipin Inhibition of Ca2+-ATPase NJ Traaseth, KN Ha, R Verardi, L Shi, JJ Buffy, LR Masterson, G Veglia Biochemistry 47 (1), 3-13, 2008 | 163 | 2008 |
Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy LR Masterson, L Shi, E Metcalfe, J Gao, SS Taylor, G Veglia Proceedings of the National Academy of Sciences 108 (17), 6969-6974, 2011 | 156 | 2011 |
Intrinsic disorder drives N-terminal ubiquitination by Ube2w V Vittal, L Shi, DM Wenzel, KM Scaglione, ED Duncan, V Basrur, ... Nature chemical biology 11 (1), 83-89, 2015 | 77 | 2015 |
cAMP-dependent protein kinase A selects the excited state of the membrane substrate phospholamban LR Masterson, T Yu, L Shi, Y Wang, M Gustavsson, MM Mueller, G Veglia Journal of molecular biology 412 (2), 155-164, 2011 | 76 | 2011 |
Structure and dynamics of a primordial catalytic fold generated by in vitro evolution FA Chao, A Morelli, JCH Iii, L Churchfield, LN Hagmann, L Shi, ... Nature chemical biology 9 (2), 81-83, 2013 | 71 | 2013 |
A conserved histidine modulates HSPB5 structure to trigger chaperone activity in response to stress-related acidosis P Rajagopal, E Tse, AJ Borst, SP Delbecq, L Shi, DR Southworth, ... elife 4, e07304, 2015 | 64 | 2015 |
A refinement protocol to determine structure, topology, and depth of insertion of membrane proteins using hybrid solution and solid-state NMR restraints L Shi, NJ Traaseth, R Verardi, A Cembran, J Gao, G Veglia Journal of biomolecular NMR 44, 195-205, 2009 | 61 | 2009 |
Dysfunctional conformational dynamics of protein kinase A induced by a lethal mutant of phospholamban hinder phosphorylation J Kim, LR Masterson, A Cembran, R Verardi, L Shi, J Gao, SS Taylor, ... Proceedings of the National Academy of Sciences 112 (12), 3716-3721, 2015 | 51 | 2015 |
Structure of the α-crystallin domain from the redox-sensitive chaperone, HSPB1 P Rajagopal, Y Liu, L Shi, AF Clouser, RE Klevit Journal of biomolecular NMR 63, 223-228, 2015 | 49 | 2015 |
Allostery and binding cooperativity of the catalytic subunit of protein kinase A by NMR spectroscopy and molecular dynamics simulations LR Masterson, A Cembran, L Shi, G Veglia Advances in protein chemistry and structural biology 87, 363-389, 2012 | 48 | 2012 |
Tilt and azimuthal angles of a transmembrane peptide: a comparison between molecular dynamics calculations and solid-state NMR data of sarcolipin in lipid membranes L Shi, A Cembran, J Gao, G Veglia Biophysical journal 96 (9), 3648-3662, 2009 | 48 | 2009 |
Paramagnetic-based NMR restraints lift residual dipolar coupling degeneracy in multidomain detergent-solubilized membrane proteins L Shi, NJ Traaseth, R Verardi, M Gustavsson, J Gao, G Veglia Journal of the American Chemical Society 133 (7), 2232-2241, 2011 | 43 | 2011 |
Probing membrane topology of the antimicrobial peptide distinctin by solid-state NMR spectroscopy in zwitterionic and charged lipid bilayers R Verardi, NJ Traaseth, L Shi, F Porcelli, L Monfregola, S De Luca, ... Biochimica et Biophysica Acta (BBA)-Biomembranes 1808 (1), 34-40, 2011 | 39 | 2011 |
A hybrid NMR/SAXS‐based approach for discriminating oligomeric protein interfaces using R osetta P Rossi, L Shi, G Liu, CM Barbieri, HW Lee, TD Grant, JR Luft, R Xiao, ... Proteins: Structure, Function, and Bioinformatics 83 (2), 309-317, 2015 | 38 | 2015 |
Structures of the excited states of phospholamban and shifts in their populations upon phosphorylation A De Simone, M Gustavsson, RW Montalvao, L Shi, G Veglia, ... Biochemistry 52 (38), 6684-6694, 2013 | 34 | 2013 |
FLAMEnGO: a fuzzy logic approach for methyl group assignment using NOESY and paramagnetic relaxation enhancement data FA Chao, L Shi, LR Masterson, G Veglia Journal of Magnetic Resonance 214, 103-110, 2012 | 33 | 2012 |