Gordon K Smyth

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Wei ShiProfessor, Monash Biomedicine Discovery Institute, Monash UniversityVerified email at monash.edu
Matthew E RitchieThe Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Belinda PhipsonLaboratory Head, The Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Yunshun ChenLaboratory Head, Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Charity W LawThe Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Yang LiaoMonash Biomedicine Discovery InstituteVerified email at monash.edu
Di WuAssociate Professor, Biostatistics Department, jointly with Adams Schools Dentistry at University ofVerified email at unc.edu
Mark D. RobinsonFull Professor of Statistical Genomics, University of ZurichVerified email at mls.uzh.ch
Stephen NuttThe Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Davis J McCarthyHead, Bioinformatics and Cellular Genomics, St Vincent's Institute of Medical ResearchVerified email at svi.edu.au
Alicia OshlackPeter MacCallum Cancer CentreVerified email at petermac.org
Aaron LunGenentech, Inc.Verified email at gene.com
Peter K. DunnUniversity of the Sunshine CoastVerified email at usc.edu.au
Alexandra L GarnhamThe Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Hannah D CoughlanThe Walter & Eliza hall institute of medical researchVerified email at wehi.edu.au
Göknur GinerPostdoctoral researcherVerified email at wehi.edu.au
Carolyn de GraafWalter and Eliza Hall InstituteVerified email at wehi.edu.au
Waruni AbeysekeraPostdoctoral Research Fellow, Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Joshy GeorgeDirector, Computational Sciences, Jackson Laboratory for Genomic Medicine, ConnecticutVerified email at jax.org
Connie SN Li-Wai-SuenWalter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au

Gordon K Smyth

Division Head, Bioinformatics, Walter and Eliza Hall Institute of Medical Research

Verified email at wehi.edu.au - Homepage

Bioinformatics statistics biostatistics genomics statistical computing


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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data MD Robinson, DJ McCarthy, GK Smyth Bioinformatics 26 (1), 139-140, 2010	38202	2010
limma powers differential expression analyses for RNA-sequencing and microarray studies ME Ritchie, B Phipson, D Wu, Y Hu, CW Law, W Shi, GK Smyth Nucleic acids research 43 (7), e47, 2015	30632	2015
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features Y Liao, GK Smyth, W Shi Bioinformatics 30 (7), 923-930, 2014	20055	2014
Bioconductor: open software development for computational biology and bioinformatics RC Gentleman, VJ Carey, DM Bates, B Bolstad, M Dettling, S Dudoit, ... Genome biology 5, 1-16, 2004	14310	2004
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments GK Smyth Statistical applications in genetics and molecular biology 3 (1), Article 3, 2004	13790	2004
Limma: linear models for microarray data GK Smyth Bioinformatics and computational biology solutions using R and Bioconductor …, 2005	7262	2005
Limma: linear models for microarray data user’s guide GK Smyth, N Thorne, J Wettenhall Bioconductor, limma package, 2005	7215*	2005
Limma: linear models for microarray data GK Smyth Bioinformatics and computational biology solutions using R and Bioconductor …, 2005	7139	2005
Limma: linear models for microarray data GK Smyth Bioinformatics and computational biology solutions using R and Bioconductor …, 2005	7139	2005
Limma: linear models for microarray data GK Smyth Bioinformatics and computational biology solutions using R and Bioconductor …, 2005	7139	2005
Gene ontology analysis for RNA-seq: accounting for selection bias MD Young, MJ Wakefield, GK Smyth, A Oshlack Genome Biology 11, R14, 2010	6309	2010
Voom: precision weights unlock linear model analysis tools for RNA-seq read counts CW Law, Y Chen, W Shi, GK Smyth Genome Biology 15 (2), R29, 2014	5850	2014
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation DJ McCarthy, Y Chen, GK Smyth Nucleic acids research 40 (10), 4288-4297, 2012	5197	2012
Orchestrating high-throughput genomic analysis with Bioconductor W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ... Nature methods 12 (2), 115-121, 2015	3569	2015
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote Y Liao, GK Smyth, W Shi Nucleic acids research 41 (10), e108, 2013	2826	2013
Generation of a functional mammary gland from a single stem cell M Shackleton, F Vaillant, KJ Simpson, J Stingl, GK Smyth, ... Nature 439 (7072), 84-88, 2006	2543	2006
Normalization of cDNA microarray data GK Smyth, T Speed Methods 31 (4), 265-273, 2003	2332	2003
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads Y Liao, GK Smyth, W Shi Nucleic acids research 47 (8), e47-e47, 2019	2168	2019
ELDA: extreme limiting dilution analysis for comparing depleted and enriched populations in stem cell and other assays Y Hu, GK Smyth Journal of immunological methods 347 (1-2), 70-78, 2009	2059	2009
Aberrant luminal progenitors as the candidate target population for basal tumor development in BRCA1 mutation carriers E Lim, F Vaillant, D Wu, NC Forrest, B Pal, AH Hart, ML Asselin-Labat, ... Nature medicine 15 (8), 907-913, 2009	1657	2009

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