Follow
Jeffrey Rosenfeld
Jeffrey Rosenfeld
Rutgers Cancer Institute of New Jersey
Verified email at cinj.rutgers.edu
Title
Cited by
Cited by
Year
The variant call format and VCFtools
P Danecek, A Auton, G Abecasis, CA Albers, E Banks, MA DePristo, ...
Bioinformatics 27 (15), 2156-2158, 2011
123862011
Combinatorial patterns of histone acetylations and methylations in the human genome
Z Wang, C Zang, JA Rosenfeld, DE Schones, A Barski, S Cuddapah, ...
Nature genetics 40 (7), 897-903, 2008
26592008
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
16992022
A systematic survey of loss-of-function variants in human protein-coding genes
DG MacArthur, S Balasubramanian, A Frankish, N Huang, J Morris, ...
Science 335 (6070), 823-828, 2012
13482012
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
O Delaneau, J Marchini, 1000 Genomes Project Consortium
Nature communications 5, 3934, 2014
4322014
Integrative annotation of variants from 1092 humans: application to cancer genomics
E Khurana, Y Fu, V Colonna, XJ Mu, HM Kang, T Lappalainen, A Sboner, ...
Science 342 (6154), 1235587, 2013
4232013
Identifying recent adaptations in large-scale genomic data
SR Grossman, KG Andersen, I Shlyakhter, S Tabrizi, S Winnicki, A Yen, ...
Cell 152 (4), 703-713, 2013
4142013
Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences
GD Poznik, Y Xue, FL Mendez, TF Willems, A Massaia, MA Wilson Sayres, ...
Nature genetics 48 (6), 593-599, 2016
3492016
The 1000 Genomes Project: data management and community access
L Clarke, X Zheng-Bradley, R Smith, E Kulesha, C Xiao, I Toneva, ...
Nature methods 9 (5), 459-462, 2012
3272012
Deleterious-and disease-allele prevalence in healthy individuals: insights from current predictions, mutation databases, and population-scale resequencing
Y Xue, Y Chen, Q Ayub, N Huang, EV Ball, M Mort, AD Phillips, K Shaw, ...
The American Journal of Human Genetics 91 (6), 1022-1032, 2012
3142012
Determination of enriched histone modifications in non-genic portions of the human genome
JA Rosenfeld, Z Wang, DE Schones, K Zhao, R DeSalle, MQ Zhang
BMC genomics 10, 1-11, 2009
3082009
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
2652020
Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study
S Li, SW Tighe, CM Nicolet, D Grove, S Levy, W Farmerie, A Viale, ...
Nature biotechnology 32 (9), 915-925, 2014
2552014
A complete reference genome improves analysis of human genetic variation
S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ...
Science 376 (6588), eabl3533, 2022
1832022
Inflammatory monocytes orchestrate innate antifungal immunity in the lung
V Espinosa, A Jhingran, O Dutta, S Kasahara, R Donnelly, P Du, ...
PLoS pathogens 10 (2), e1003940, 2014
1802014
The impact of read length on quantification of differentially expressed genes and splice junction detection
S Chhangawala, G Rudy, CE Mason, JA Rosenfeld
Genome biology 16 (1), 1-10, 2015
1712015
Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
D Butler, C Mozsary, C Meydan, J Foox, J Rosiene, A Shaiber, D Danko, ...
Nature communications 12 (1), 1660, 2021
1402021
Genome-wide association study implicates NDST3 in schizophrenia and bipolar disorder
T Lencz, S Guha, C Liu, J Rosenfeld, S Mukherjee, P DeRosse, M John, ...
Nature communications 4 (1), 2739, 2013
1282013
Benchmarking challenging small variants with linked and long reads
J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ...
Cell Genomics 2 (5), 100128, 2022
1092022
Limitations of the human reference genome for personalized genomics
JA Rosenfeld, CE Mason, TM Smith
PloS one 7 (7), e40294, 2012
912012
The system can't perform the operation now. Try again later.
Articles 1–20