James MacDonald
James MacDonald
Biostatistician, University of Washington
Verified email at uw.edu
Cited by
Cited by
Orchestrating high-throughput genomic analysis with Bioconductor
W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ...
Nature Methods 12 (2), 115-121, 2015
Orchestrating high-throughput genomic analysis with Bioconductor
M Morgan, V Carey, R Gentelman, M Carlson, B Carvalho, ...
Orchestrating high-throughput genomic analysis with Bioconductor, 2015
Gene expression signatures for predicting prognosis of squamous cell and adenocarcinomas of the lung
M Raponi, Y Zhang, J Yu, G Chen, G Lee, JMG Taylor, J MacDonald, ...
Cancer research 66 (15), 7466-7472, 2006
Candidate exome capture identifies mutation of SDCCAG8 as the cause of a retinal-renal ciliopathy
EA Otto, TW Hurd, R Airik, M Chaki, W Zhou, C Stoetzel, SB Patil, S Levy, ...
Nature genetics 42 (10), 840-850, 2010
Identification and characterization of Hoxa9 binding sites in hematopoietic cells
Y Huang, K Sitwala, J Bronstein, D Sanders, M Dandekar, C Collins, ...
Blood 119 (2), 388-398, 2012
A systematic approach to mapping recessive disease genes in individuals from outbred populations
F Hildebrandt, SF Heeringa, F Rüschendorf, M Attanasio, G Nürnberg, ...
PLoS Genet 5 (1), e1000353, 2009
Coagulation factor X activates innate immunity to human species C adenovirus
K Doronin, JW Flatt, NC Di Paolo, R Khare, O Kalyuzhniy, M Acchione, ...
Science 338 (6108), 795-798, 2012
Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data
K Shedden, W Chen, R Kuick, D Ghosh, J Macdonald, KR Cho, ...
BMC bioinformatics 6 (1), 26, 2005
COPA—cancer outlier profile analysis
JW Macdonald, D Ghosh
Bioinformatics 22 (23), 2950-2951, 2006
The inflammatory microenvironment of the aging prostate facilitates cellular proliferation and hypertrophy
LA Begley, S Kasina, J MacDonald, JA Macoska
Cytokine 43 (2), 194-199, 2008
CXCL12 overexpression and secretion by aging fibroblasts enhance human prostate epithelial proliferation in vitro
L Begley, C Monteleon, RB Shah, JW MacDonald, JA Macoska
Aging cell 4 (6), 291-298, 2005
Uterine overdistention induces preterm labor mediated by inflammation: observations in pregnant women and nonhuman primates
KMA Waldorf, N Singh, AR Mohan, RC Young, L Ngo, A Das, J Tsai, ...
American journal of obstetrics and gynecology 213 (6), 830. e1-830. e19, 2015
Nineteen novel NPHS1 mutations in a worldwide cohort of patients with congenital nephrotic syndrome (CNS)
DS Schoeb, G Chernin, SF Heeringa, V Matejas, S Held, V Vega-Warner, ...
Nephrology Dialysis Transplantation 25 (9), 2970-2976, 2010
Deafness‐related plasticity in the inferior colliculus: gene expression profiling following removal of peripheral activity
AG Holt, M Asako, CA Lomax, JW MacDonald, L Tong, MI Lomax, ...
Journal of neurochemistry 93 (5), 1069-1086, 2005
Identification of 11 novel mutations in eight BBS genes by high-resolution homozygosity mapping
HM Harville, S Held, A Diaz-Font, EE Davis, BH Diplas, RA Lewis, ...
Journal of medical genetics 47 (4), 262-267, 2010
Discovery of transcriptional regulators and signaling pathways in the developing pituitary gland by bioinformatic and genomic approaches
ML Brinkmeier, SW Davis, P Carninci, JW MacDonald, J Kawai, D Ghosh, ...
Genomics 93 (5), 449-460, 2009
Whole-exome resequencing distinguishes cystic kidney diseases from phenocopies in renal ciliopathies
HY Gee, EA Otto, TW Hurd, S Ashraf, M Chaki, A Cluckey, V Vega-Warner, ...
Kidney international 85 (4), 880-887, 2014
Group B Streptococcus circumvents neutrophils and neutrophil extracellular traps during amniotic cavity invasion and preterm labor
E Boldenow, C Gendrin, L Ngo, C Bierle, J Vornhagen, M Coleman, ...
Sci Immunol 1, eaah4576, 2016
CXCL12 activates a robust transcriptional response in human prostate epithelial cells
LA Begley, JW MacDonald, ML Day, JA Macoska
Journal of Biological Chemistry 282 (37), 26767-26774, 2007
Long-term outdoor air pollution and DNA methylation in circulating monocytes: results from the Multi-Ethnic Study of Atherosclerosis (MESA)
GC Chi, Y Liu, JW MacDonald, RG Barr, KM Donohue, MD Hensley, ...
Environmental Health 15 (1), 119, 2016
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