Soohyun Lee
Soohyun Lee
Senior Bioinformatics Scientist, Harvard Medical School
Verified email at hms.harvard.edu
TitleCited byYear
Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells
M Ghildiyal, H Seitz, MD Horwich, C Li, T Du, S Lee, J Xu, ELW Kittler, ...
Science 320 (5879), 1077-1081, 2008
6642008
Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies
C Li, VV Vagin, S Lee, J Xu, S Ma, H Xi, H Seitz, MD Horwich, M Syrzycka, ...
Cell 137 (3), 509-521, 2009
4802009
Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution
S Lee, B Liu, S Lee, SX Huang, B Shen, SB Qian
Proceedings of the National Academy of Sciences 109 (37), E2424-E2432, 2012
4012012
The Drosophila HP1 homolog Rhino is required for transposon silencing and piRNA production by dual-strand clusters
C Klattenhoff, H Xi, C Li, S Lee, J Xu, JS Khurana, F Zhang, N Schultz, ...
Cell 138 (6), 1137-1149, 2009
3212009
Somatic mutation in single human neurons tracks developmental and transcriptional history
MA Lodato, MB Woodworth, S Lee, GD Evrony, BK Mehta, A Karger, ...
Science 350 (6256), 94-98, 2015
2832015
Comparative analysis of metazoan chromatin organization
JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ...
Nature 512 (7515), 449, 2014
2652014
Hallmarks of pluripotency
A De Los Angeles, F Ferrari, R Xi, Y Fujiwara, N Benvenisty, H Deng, ...
Nature 525 (7570), 469, 2015
2422015
A comparison of genetically matched cell lines reveals the equivalence of human iPSCs and ESCs
J Choi, S Lee, W Mallard, K Clement, GM Tagliazucchi, H Lim, IY Choi, ...
Nature biotechnology 33 (11), 1173, 2015
1662015
Accurate quantification of transcriptome from RNA-Seq data by effective length normalization
S Lee, CH Seo, B Lim, JO Yang, J Oh, M Kim, S Lee, B Lee, C Kang, ...
Nucleic Acids Research 39 (2), e9-e9, 2011
1112011
HiGlass: web-based visual exploration and analysis of genome interaction maps
P Kerpedjiev, N Abdennur, F Lekschas, C McCallum, K Dinkla, H Strobelt, ...
Genome biology 19 (1), 125, 2018
612018
Failure to replicate the STAP cell phenomenon
A De Los Angeles, F Ferrari, Y Fujiwara, R Mathieu, S Lee, S Lee, HC Tu, ...
Nature 525 (7570), E6, 2015
372015
Relative codon adaptation index, a sensitive measure of codon usage bias
S Lee, S Weon, S Lee, C Kang
Evolutionary Bioinformatics 6, 47, 2010
362010
Genes involved in complex adaptive processes tend to have highly conserved upstream regions in mammalian genomes
S Lee, I Kohane, S Kasif
BMC genomics 6 (1), 168, 2005
342005
Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data
J Fan, HO Lee, S Lee, D Ryu, S Lee, C Xue, SJ Kim, K Kim, N Barkas, ...
Genome research 28 (8), 1217-1227, 2018
332018
DUSP9 Modulates DNA Hypomethylation in Female Mouse Pluripotent Stem Cells
J Choi, K Clement, AJ Huebner, J Webster, CM Rose, J Brumbaugh, ...
Cell Stem Cell 20 (5), 706-719. e7, 2017
332017
Quantitative analysis of single nucleotide polymorphisms within copy number variation
S Lee, S Kasif, Z Weng, CR Cantor
PLoS One 3 (12), e3906, 2008
242008
NGSCheckMate: software for validating sample identity in next-generation sequencing studies within and across data types
S Lee, S Lee, S Ouellette, WY Park, EA Lee, PJ Park
Nucleic acids research 45 (11), e103-e103, 2017
232017
Analyzing Somatic Genome Rearrangements in Human Cancers by Using Whole-Exome Sequencing
L Yang, MS Lee, H Lu, DY Oh, YJ Kim, D Park, G Park, X Ren, CA Bristow, ...
The American Journal of Human Genetics 98 (5), 843-856, 2016
192016
EMSAR: estimation of transcript abundance from RNA-seq data by mappability-based segmentation and reclustering
S Lee, CH Seo, BH Alver, S Lee, PJ Park
BMC bioinformatics 16 (1), 278, 2015
132015
CHOISS for selection of single nucleotide polymorphism markers on interval regularity
S Lee, C Kang
Bioinformatics 20 (4), 581-582, 2004
42004
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Articles 1–20