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Ira Deveson
Ira Deveson
Verified email at garvan.org.au
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Cited by
Cited by
Year
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis
RA Bull, TN Adikari, JM Ferguson, JM Hammond, I Stevanovski, ...
Nature communications 11 (1), 6272, 2020
2272020
Reference standards for next-generation sequencing
SA Hardwick, IW Deveson, TR Mercer
Nature Reviews Genetics 18 (8), 473-484, 2017
2262017
The dimensions, dynamics, and relevance of the mammalian noncoding transcriptome
IW Deveson, SA Hardwick, TR Mercer, JS Mattick
Trends in Genetics 33 (7), 464-478, 2017
1942017
Tracking the international spread of SARS-CoV-2 lineages B. 1.1. 7 and B. 1.351/501Y-V2 with grinch
O'Toole, V Hill, OG Pybus, A Watts, II Bogoch, K Khan, JP Messina, ...
Wellcome Open Research 6, 2021
1802021
Diagnosis of fusion genes using targeted RNA sequencing
EE Heyer, IW Deveson, D Wooi, CI Selinger, RJ Lyons, VM Hayes, ...
Nature communications 10 (1), 1388, 2019
1472019
Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology
IW Deveson, B Gong, K Lai, JS LoCoco, TA Richmond, J Schageman, ...
Nature biotechnology 39 (9), 1115-1128, 2021
1422021
Spliced synthetic genes as internal controls in RNA sequencing experiments
SA Hardwick, WY Chen, T Wong, IW Deveson, J Blackburn, SB Andersen, ...
Nature methods 13 (9), 792-798, 2016
1272016
Universal alternative splicing of noncoding exons
IW Deveson, ME Brunck, J Blackburn, E Tseng, T Hon, TA Clark, MB Clark, ...
Cell Systems 6 (2), 245-255. e5, 2018
1252018
Differential intron retention in Jumonji chromatin modifier genes is implicated in reptile temperature-dependent sex determination
IW Deveson, CE Holleley, J Blackburn, JA Marshall Graves, JS Mattick, ...
Science advances 3 (6), e1700731, 2017
1172017
An update on the neurological short tandem repeat expansion disorders and the emergence of long-read sequencing diagnostics
SR Chintalaphani, SS Pineda, IW Deveson, KR Kumar
Acta Neuropathologica Communications 9 (1), 98, 2021
942021
Synthetic microbe communities provide internal reference standards for metagenome sequencing and analysis
SA Hardwick, WY Chen, T Wong, BS Kanakamedala, IW Deveson, ...
Nature communications 9 (1), 3096, 2018
912018
Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing
I Stevanovski, SR Chintalaphani, H Gamaarachchi, JM Ferguson, ...
Science advances 8 (9), eabm5386, 2022
782022
Respiratory viral co-infections among SARS-CoV-2 cases confirmed by virome capture sequencing
KW Kim, IW Deveson, CNI Pang, M Yeang, Z Naing, T Adikari, ...
Scientific reports 11 (1), 3934, 2021
602021
Fast nanopore sequencing data analysis with SLOW5
H Gamaarachchi, H Samarakoon, SP Jenner, JM Ferguson, TG Amos, ...
Nature biotechnology 40 (7), 1026-1029, 2022
452022
No evidence of human genome integration of SARS-CoV-2 found by long-read DNA sequencing
N Smits, J Rasmussen, GO Bodea, AA Amarilla, P Gerdes, ...
Cell reports 36 (7), 2021
402021
Representing genetic variation with synthetic DNA standards
IW Deveson, WY Chen, T Wong, SA Hardwick, SB Andersen, LK Nielsen, ...
Nature methods 13 (9), 784-791, 2016
402016
DNA methylation is required to maintain both DNA replication timing precision and 3D genome organization integrity
Q Du, GC Smith, PL Luu, JM Ferguson, NJ Armstrong, CE Caldon, ...
Cell Reports 36 (12), 2021
382021
Target RNA secondary structure is a major determinant of miR159 efficacy
Z Zheng, M Reichel, I Deveson, G Wong, J Li, AA Millar
Plant Physiology 174 (3), 1764-1778, 2017
382017
Two transcriptionally distinct pathways drive female development in a reptile with both genetic and temperature dependent sex determination
SL Whiteley, CE Holleley, S Wagner, J Blackburn, IW Deveson, ...
PLoS Genetics 17 (4), e1009465, 2021
262021
Genopo: a nanopore sequencing analysis toolkit for portable Android devices
H Samarakoon, S Punchihewa, A Senanayake, JM Hammond, ...
Communications Biology 3 (1), 538, 2020
202020
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