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Alessandro Coppe
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MAGIA, a web-based tool for miRNA and Genes Integrated Analysis
G Sales, A Coppe, A Bisognin, M Biasiolo, S Bortoluzzi, C Romualdi
Nucleic acids research 38 (suppl_2), W352-W359, 2010
1842010
Novel definition files for human GeneChips based on GeneAnnot
F Ferrari, S Bortoluzzi, A Coppe, A Sirota, M Safran, M Shmoish, S Ferrari, ...
BMC bioinformatics 8, 1-6, 2007
1452007
Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring
M Milan, A Coppe, R Reinhardt, LM Cancela, RB Leite, C Saavedra, ...
BMC genomics 12, 1-18, 2011
1442011
MAGIA2: from miRNA and genes expression data integrative analysis to microRNA–transcription factor mixed regulatory circuits (2012 update)
A Bisognin, G Sales, A Coppe, S Bortoluzzi, C Romualdi
Nucleic acids research 40 (W1), W13-W21, 2012
1382012
Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically …
A Coppe, JM Pujolar, GE Maes, PF Larsen, MM Hansen, L Bernatchez, ...
BMC genomics 11, 1-13, 2010
1172010
High incidence of activating STAT5B mutations in CD4-positive T-cell large granular lymphocyte leukemia
EI Andersson, T Tanahashi, N Sekiguchi, VR Gasparini, S Bortoluzzi, ...
Blood, The Journal of the American Society of Hematology 128 (20), 2465-2468, 2016
1032016
Surviving in a toxic world: transcriptomics and gene expression profiling in response to environmental pollution in the critically endangered European eel
JM Pujolar, IAM Marino, M Milan, A Coppe, GE Maes, F Capoccioni, ...
BMC genomics 13, 1-21, 2012
902012
Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon
M Vidotto, A Grapputo, E Boscari, F Barbisan, A Coppe, G Grandi, ...
BMC genomics 14, 1-16, 2013
842013
Genome evolution in the cold: Antarctic icefish muscle transcriptome reveals selective duplications increasing mitochondrial function
A Coppe, C Agostini, IAM Marino, L Zane, L Bargelloni, S Bortoluzzi, ...
Genome biology and evolution 5 (1), 45-60, 2013
712013
Impact of host genes and strand selection on miRNA and miRNA* expression
M Biasiolo, G Sales, M Lionetti, L Agnelli, K Todoerti, A Bisognin, A Coppe, ...
PloS one 6 (8), e23854, 2011
682011
mRNA-Seq and microarray development for the Grooved carpet shell clam, Ruditapes decussatus: a functional approach to unravel host -parasite interaction
RB Leite, M Milan, A Coppe, S Bortoluzzi, A Dos Anjos, R Reinhardt, ...
Bmc Genomics 14, 1-17, 2013
482013
REEF: searching REgionally Enriched Features in genomes
A Coppe, GA Danieli, S Bortoluzzi
BMC bioinformatics 7, 1-7, 2006
452006
A-MADMAN: annotation-based microarray data meta-analysis tool
A Bisognin, A Coppe, F Ferrari, D Risso, C Romualdi, S Bicciato, ...
BMC bioinformatics 10, 1-11, 2009
432009
Genomic landscape characterization of large granular lymphocyte leukemia with a systems genetics approach
A Coppe, EI Andersson, A Binatti, VR Gasparini, S Bortoluzzi, M Clemente, ...
Leukemia 31 (5), 1243-1246, 2017
422017
TRAM (Transcriptome Mapper): database-driven creation and analysis of transcriptome maps from multiple sources
L Lenzi, F Facchin, F Piva, M Giulietti, MC Pelleri, F Frabetti, L Vitale, ...
BMC genomics 12, 1-18, 2011
382011
Genomic expression during human myelopoiesis
F Ferrari, S Bortoluzzi, A Coppe, D Basso, S Bicciato, R Zini, C Gemelli, ...
BMC genomics 8, 1-19, 2007
372007
Somatic mutations in specific and connected subpathways are associated with short neuroblastoma patients’ survival and indicate proteins targetable at onset of disease
MR Esposito, A Binatti, M Pantile, A Coppe, K Mazzocco, L Longo, ...
International journal of cancer 143 (10), 2525-2536, 2018
312018
A high definition picture of somatic mutations in chronic lymphoproliferative disorder of natural killer cells
VR Gasparini, A Binatti, A Coppe, A Teramo, C Vicenzetto, G Calabretto, ...
Blood cancer journal 10 (4), 42, 2020
302020
Sequencing and characterization of striped venus transcriptome expand resources for clam fishery genetics
A Coppe, S Bortoluzzi, G Murari, IAM Marino, L Zane, C Papetti
Public Library of Science 7 (9), e44185, 2012
292012
A multistep bioinformatic approach detects putative regulatory elements in gene promoters
S Bortoluzzi, A Coppe, A Bisognin, C Pizzi, GA Danieli
BMC bioinformatics 6, 1-15, 2005
292005
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Articles 1–20