Tanja Woyke
Tanja Woyke
DOE Joint Genome Institute
Verified email at lbl.gov
TitleCited byYear
Insights into the phylogeny and coding potential of microbial dark matter
C Rinke, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, ...
Nature 499 (7459), 431, 2013
12742013
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
M Hess, A Sczyrba, R Egan, TW Kim, H Chokhawala, G Schroth, S Luo, ...
Science 331 (6016), 463-467, 2011
9922011
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
PM Shih, D Wu, A Latifi, SD Axen, DP Fewer, E Talla, A Calteau, F Cai, ...
Proceedings of the National Academy of Sciences 110 (3), 1053-1058, 2013
5042013
IMG 4 version of the integrated microbial genomes comparative analysis system
VM Markowitz, IMA Chen, K Palaniappan, K Chu, E Szeto, M Pillay, ...
Nucleic acids research 42 (D1), D560-D567, 2013
4792013
Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma
YJ Huang, CE Nelson, EL Brodie, TZ DeSantis, MS Baek, J Liu, T Woyke, ...
Journal of Allergy and Clinical Immunology 127 (2), 372-381. e3, 2011
4672011
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ...
Journal of Computational Biology 20 (10), 714-737, 2013
4642013
Symbiosis insights through metagenomic analysis of a microbial consortium
T Woyke, H Teeling, NN Ivanova, M Huntemann, M Richter, FO Gloeckner, ...
Nature 443 (7114), 950, 2006
4222006
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
OU Mason, TC Hazen, S Borglin, PSG Chain, EA Dubinsky, JL Fortney, ...
The ISME journal 6 (9), 1715, 2012
3872012
Functional characteristics of an endophyte community colonizing rice roots as revealed by metagenomic analysis
A Sessitsch, P Hardoim, J Döring, A Weilharter, A Krause, T Woyke, ...
Molecular Plant-Microbe Interactions 25 (1), 28-36, 2012
3712012
Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean
BK Swan, M Martinez-Garcia, CM Preston, A Sczyrba, T Woyke, D Lamy, ...
Science 333 (6047), 1296-1300, 2011
3652011
Assembling the marine metagenome, one cell at a time
T Woyke, G Xie, A Copeland, JM Gonzalez, C Han, H Kiss, JH Saw, ...
PloS one 4 (4), e5299, 2009
3142009
Gene expression profile of glioblastoma multiforme invasive phenotype points to new therapeutic targets
DB Hoelzinger, L Mariani, J Weis, T Woyke, TJ Berens, WS McDonough, ...
Neoplasia 7 (1), 7-16, 2005
2992005
Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton
ML Cuvelier, AE Allen, A Monier, JP McCrow, M Messié, SG Tringe, ...
Proceedings of the National Academy of Sciences 107 (33), 14679-14684, 2010
2252010
Assembling genomes and mini-metagenomes from highly chimeric reads
S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ...
Annual International Conference on Research in Computational Molecular …, 2013
2172013
Primer and platform effects on 16S rRNA tag sequencing
J Tremblay, K Singh, A Fern, ES Kirton, S He, T Woyke, J Lee, F Chen, ...
Frontiers in microbiology 6, 771, 2015
2132015
Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
BK Swan, B Tupper, A Sczyrba, FM Lauro, M Martinez-Garcia, ...
Proceedings of the National Academy of Sciences 110 (28), 11463-11468, 2013
2102013
One bacterial cell, one complete genome
T Woyke, D Tighe, K Mavromatis, A Clum, A Copeland, W Schackwitz, ...
PloS one 5 (4), e10314, 2010
1932010
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725, 2017
1922017
Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species
D Coleman‐Derr, D Desgarennes, C Fonseca‐Garcia, S Gross, ...
New Phytologist 209 (2), 798-811, 2016
1862016
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063, 2017
1842017
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