| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project ENCODE Project Consortium nature 447 (7146), 799, 2007 | 5268 | 2007 |
| Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution LDW Hillier, W Miller, E Birney, W Warren, RC Hardison, CP Ponting, ... Nature 432 (7018), 695-716, 2004 | 2426 | 2004 |
| The ENCODE (ENCyclopedia of DNA elements) project ENCODE Project Consortium Science 306 (5696), 636-640, 2004 | 1776 | 2004 |
| GSVA: gene set variation analysis for microarray and RNA-seq data S Hänzelmann, R Castelo, J Guinney BMC bioinformatics 14 (1), 1-15, 2013 | 1725 | 2013 |
| Regulation of Fas alternative splicing by antagonistic effects of TIA-1 and PTB on exon definition JM Izquierdo, N Majós, S Bonnal, C Martínez, R Castelo, R Guigó, ... Molecular cell 19 (4), 475-484, 2005 | 371 | 2005 |
| EGASP: the human ENCODE genome annotation assessment project R Guigó, P Flicek, JF Abril, A Reymond, J Lagarde, F Denoeud, ... Genome biology 7 (1), 1-31, 2006 | 309 | 2006 |
| Tandem chimerism as a means to increase protein complexity in the human genome G Parra, A Reymond, N Dabbouseh, ET Dermitzakis, R Castelo, ... Genome research 16 (1), 37-44, 2006 | 227 | 2006 |
| Improving Markov chain Monte Carlo model search for data mining P Giudici, R Castelo Machine learning 50 (1), 127-158, 2003 | 223 | 2003 |
| Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions F Denoeud, P Kapranov, C Ucla, A Frankish, R Castelo, J Drenkow, ... Genome research 17 (6), 746-759, 2007 | 206 | 2007 |
| Origin of primate orphan genes: a comparative genomics approach M Toll-Riera, N Bosch, N Bellora, R Castelo, L Armengol, X Estivill, ... Molecular biology and evolution 26 (3), 603-612, 2009 | 195 | 2009 |
| A robust procedure for Gaussian graphical model search from microarray data with p larger than n. R Castelo, A Roverato Journal of Machine Learning Research 7 (12), 2006 | 135 | 2006 |
| On inclusion-driven learning of Bayesian networks R Castelo, T Kocka Journal of Machine Learning Research 4 (Sep), 527-574, 2003 | 116* | 2003 |
| Reverse engineering molecular regulatory networks from microarray data with qp-graphs R Castelo, A Roverato Journal of Computational Biology 16 (2), 213-227, 2009 | 98 | 2009 |
| Comparison of splice sites in mammals and chicken JF Abril, R Castelo, R Guigó Genome research 15 (1), 111-119, 2005 | 94 | 2005 |
| Learning Bayesian network classifiers for credit scoring using Markov Chain Monte Carlo search B Baesens, M Egmont-Petersen, R Castelo, J Vanthienen Object recognition supported by user interaction for service robots 3, 49-52, 2002 | 68 | 2002 |
| Splice site identification by idlBNs R Castelo, R Guigó Bioinformatics 20 (suppl_1), i69-i76, 2004 | 65 | 2004 |
| Priors on network structures. Biasing the search for Bayesian networks R Castelo, A Siebes International Journal of Approximate Reasoning 24 (1), 39-57, 2000 | 63 | 2000 |
| Improved learning of Bayesian networks T Kocka, R Castelo arXiv preprint arXiv:1301.2283, 2013 | 61 | 2013 |
| A flexible count data model to fit the wide diversity of expression profiles arising from extensively replicated RNA-seq experiments M Esnaola, P Puig, D Gonzalez, R Castelo, JR Gonzalez BMC bioinformatics 14 (1), 1-22, 2013 | 55 | 2013 |
| Public data and open source tools for multi-assay genomic investigation of disease L Kannan, M Ramos, A Re, N El-Hachem, Z Safikhani, DMA Gendoo, ... Briefings in bioinformatics 17 (4), 603-615, 2016 | 53 | 2016 |
