Alistair Forrest

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	All	Since 2016
Citations	22179	11631
h-index	58	41
i10-index	114	98

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Co-authors

Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Verified email at postman.riken.jp
hideya kawajiRIKEN PMIVerified email at gsc.riken.jp
Timo LassmannTelethon Kids InstituteVerified email at telethonkids.org.au
Carsten O. DaubAssociate Professor, Karolinska InstitutetVerified email at ki.se
Prof. Sean M. GrimmondThe University of Melbourne Centre for Cancer ResearchVerified email at unimelb.edu.au
harukazu suzukiGroup Director, RIKEN CLSTVerified email at gsc.riken.jp
David HumeMater Research Institute-University of QueenslandVerified email at uq.edu.au
Erik ArnerRIKENVerified email at gsc.riken.jp
Geoffrey FaulknerQueensland Brain Institute @ Mater Research Institute - University of QueenslandVerified email at mater.uq.edu.au
Jessica SeverinRIKENVerified email at gsc.riken.jp
Albin SandelinProfessor, The Bioinformatics Centre, Department of Biology & BRIC, Copenhagen UniversityVerified email at binf.ku.dk
Robin AnderssonUniversity of CopenhagenVerified email at binf.ku.dk
Stefano GustincichDeputy Director Life Tech Istituto Italiano di TecnologiaVerified email at iit.it
Brian GabrielliMater Research Institute - The University of QueenslandVerified email at uq.edu.au
Nicolas BertinGenome Institute of SingaporeVerified email at gis.a-star.edu.sg
Kate SchroderLab Head, Institute for Molecular Bioscience, University of QLDVerified email at imb.uq.edu.au
Jayson HarshbargerTechnical Scientist at RIKEN Center for Life Science TechnologiesVerified email at gsc.riken.jp
Takeya KasukawaLaboratory for Large-Scale Biomedical Data Technology, RIKEN Center for Integrative Medical SciencesVerified email at riken.go.jp
Katharine Irvineuniversity of queenslandVerified email at uq.edu.au
Claudia CarrieriEMBLVerified email at embl.it

Alistair Forrest

Head of Systems Biology and Genomics, Harry Perkins Institute of Medical Research

Verified email at perkins.uwa.edu.au - Homepage

Systems Biology CAGE transcriptomics Single Cell scRNAseq


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The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... Science 309 (5740), 1559-1563, 2005	3465	2005
An atlas of active enhancers across human cell types and tissues R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ... Nature 507 (7493), 455-461, 2014	1698	2014
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, ... Nature 420 (6915), 563-573, 2002	1698	2002
Genome-wide analysis of mammalian promoter architecture and evolution P Carninci, A Sandelin, B Lenhard, S Katayama, K Shimokawa, ... Nature genetics 38 (6), 626-635, 2006	1345	2006
A promoter level mammalian expression atlas ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL de Hoon, V Haberle, ... Nature 507 (7493), 462-470, 2014	1282*	2014
Stem cell transcriptome profiling via massive-scale mRNA sequencing N Cloonan, ARR Forrest, G Kolle, BBA Gardiner, GJ Faulkner, MK Brown, ... Nature methods 5 (7), 613-619, 2008	1192	2008
Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat C Carrieri, L Cimatti, M Biagioli, A Beugnet, S Zucchelli, S Fedele, ... Nature 491 (7424), 454-457, 2012	759	2012
The regulated retrotransposon transcriptome of mammalian cells GJ Faulkner, Y Kimura, CO Daub, S Wani, C Plessy, KM Irvine, ... Nature genetics 41 (5), 563-571, 2009	707	2009
An atlas of combinatorial transcriptional regulation in mouse and man T Ravasi, H Suzuki, CV Cannistraci Cell 140 (5), 744-752, 2010	678	2010
An atlas of human long non-coding RNAs with accurate 5′ ends CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ... Nature 543 (7644), 199-204, 2017	562	2017
Gateways to the FANTOM5 promoter level mammalian expression atlas M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ... Genome biology 16 (1), 1-14, 2015	448	2015
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line H Suzuki, ARR Forrest, E van Nimwegen, CO Daub, PJ Balwierz, ... Nature genetics 41 (5), 553-562, 2009	430	2009
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F Drabløs, ... Science 347 (6225), 1010-1014, 2015	412	2015
Tiny RNAs associated with transcription start sites in animals RJ Taft, EA Glazov, N Cloonan, C Simons, S Stephen, GJ Faulkner, ... Nature genetics 41 (5), 572-578, 2009	393	2009
The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition N Cloonan, MK Brown, AL Steptoe, S Wani, WL Chan, ARR Forrest, ... Genome biology 9 (8), R127, 2008	291	2008
A draft network of ligand-receptor-mediated multicellular signalling in human JA Ramilowski, T Goldberg, J Harshbarger, E Kloppman, M Lizio, ... Nature communications 6, 2015	273	2015
Induction of microRNAs, mir-155, mir-222, mir-424 and mir-503, promotes monocytic differentiation through combinatorial regulation ARR Forrest, M Kanamori-Katayama, Y Tomaru, T Lassmann, N Ninomiya, ... Leukemia 24 (2), 460-466, 2009	253	2009
MiR-107 and MiR-185 can induce cell cycle arrest in human non small cell lung cancer cell lines Y Takahashi, ARR Forrest, E Maeno, T Hashimoto, CO Daub, J Yasuda PLoS One 4 (8), e6677, 2009	251	2009
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation J Fraser, C Ferrai, AM Chiariello, M Schueler, T Rito, G Laudanno, ... Molecular Systems Biology 11 (12), 852, 2015	247	2015
An integrated expression atlas of miRNAs and their promoters in human and mouse D de Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ... Nature Biotechnology 35 (9), 872-878, 2017	221	2017

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