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Joshua J. Waterfall
Joshua J. Waterfall
Verified email at curie.fr - Homepage
Title
Cited by
Cited by
Year
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
LJ Core, JJ Waterfall, JT Lis
Science 322 (5909), 1845-1848, 2008
22482008
Universally sloppy parameter sensitivities in systems biology models
RN Gutenkunst, JJ Waterfall, FP Casey, KS Brown, CR Myers, JP Sethna
PLoS computational biology 3 (10), e189, 2007
13762007
A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells
N Hah, CG Danko, L Core, JJ Waterfall, A Siepel, JT Lis, WL Kraus
Cell 145 (4), 622-634, 2011
5382011
Succinate dehydrogenase mutation underlies global epigenomic divergence in gastrointestinal stromal tumor
JK Killian, SY Kim, M Miettinen, C Smith, M Merino, M Tsokos, M Quezado, ...
Cancer discovery 3 (6), 648-657, 2013
3522013
Common molecular subtypes among Asian hepatocellular carcinoma and cholangiocarcinoma
J Chaisaingmongkol, A Budhu, H Dang, S Rabibhadana, B Pupacdi, ...
Cancer cell 32 (1), 57-70. e3, 2017
3392017
Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells
IM Min, JJ Waterfall, LJ Core, RJ Munroe, J Schimenti, JT Lis
Genes & development 25 (7), 742-754, 2011
3352011
High prevalence of MAP2K1 mutations in variant and IGHV4-34–expressing hairy-cell leukemias
JJ Waterfall, E Arons, RL Walker, M Pineda, L Roth, JK Killian, OD Abaan, ...
Nature genetics 46 (1), 8-10, 2014
2832014
Defining the status of RNA polymerase at promoters
LJ Core, JJ Waterfall, DA Gilchrist, DC Fargo, H Kwak, K Adelman, JT Lis
Cell reports 2 (4), 1025-1035, 2012
2702012
Point mutations in exon 1B of APC reveal gastric adenocarcinoma and proximal polyposis of the stomach as a familial adenomatous polyposis variant
J Li, SL Woods, S Healey, J Beesley, X Chen, JS Lee, H Sivakumaran, ...
The American Journal of Human Genetics 98 (5), 830-842, 2016
2182016
The epigenetic control of stemness in CD8+ T cell fate commitment
L Pace, C Goudot, E Zueva, P Gueguen, N Burgdorf, JJ Waterfall, ...
Science 359 (6372), 177-186, 2018
1982018
Recurrent epimutation of SDHC in gastrointestinal stromal tumors
JK Killian, M Miettinen, RL Walker, Y Wang, YJ Zhu, JJ Waterfall, N Noyes, ...
Science translational medicine 6 (268), 268ra177-268ra177, 2014
1832014
Sloppy-model universality class and the Vandermonde matrix
JJ Waterfall, FP Casey, RN Gutenkunst, KS Brown, CR Myers, ...
Physical review letters 97 (15), 150601, 2006
1792006
Harnessing synthetic lethality to predict the response to cancer treatment
JS Lee, A Das, L Jerby-Arnon, R Arafeh, N Auslander, M Davidson, ...
Nature communications 9 (1), 2546, 2018
1142018
Clonally expanded T cells reveal immunogenicity of rhabdoid tumors
A Leruste, J Tosello, RN Ramos, A Tauziède-Espariat, S Brohard, ZY Han, ...
Cancer cell 36 (6), 597-612. e8, 2019
1132019
Transcriptional activation by the thyroid hormone receptor through ligand-dependent receptor recruitment and chromatin remodelling
L Grøntved, JJ Waterfall, DW Kim, S Baek, MH Sung, L Zhao, JW Park, ...
Nature communications 6 (1), 7048, 2015
1132015
Optimal experimental design in an epidermal growth factor receptor signalling and down-regulation model
FP Casey, D Baird, Q Feng, RN Gutenkunst, JJ Waterfall, CR Myers, ...
IET systems biology 1 (3), 190-202, 2007
982007
Contribution of resident and circulating precursors to tumor-infiltrating CD8+ T cell populations in lung cancer
P Gueguen, C Metoikidou, T Dupic, M Lawand, C Goudot, S Baulande, ...
Science Immunology 6 (55), eabd5778, 2021
872021
Extracting falsifiable predictions from sloppy models
RN Gutenkunst, FP Casey, JJ Waterfall, CR Myers, JP Sethna
Annals of the New York Academy of Sciences 1115 (1), 203-211, 2007
732007
Evolutionary Routes in Metastatic Uveal Melanomas Depend on MBD4 Alterations
M Rodrigues, L Mobuchon, A Houy, S Alsafadi, S Baulande, O Mariani, ...
Clinical Cancer Research 25 (18), 5513-5524, 2019
542019
Imprints and DPPA3 are bypassed during pluripotency-and differentiation-coupled methylation reprogramming in testicular germ cell tumors
JK Killian, LCJ Dorssers, B Trabert, AJM Gillis, MB Cook, Y Wang, ...
Genome research 26 (11), 1490-1504, 2016
472016
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