|Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans|
TD Querec, RS Akondy, EK Lee, W Cao, HI Nakaya, D Teuwen, A Pirani, ...
Nature immunology 10 (1), 116-125, 2009
|Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4|
M Gilchrist, V Thorsson, B Li, AG Rust, M Korb, K Kennedy, T Hai, ...
Nature 441 (7090), 173-178, 2006
|Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry|
F Desiere, EW Deutsch, AI Nesvizhskii, P Mallick, NL King, JK Eng, ...
Genome biology 6 (1), R9, 2004
|Function of C/EBPδ in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals|
V Litvak, SA Ramsey, AG Rust, DE Zak, KA Kennedy, AE Lampano, ...
Nature immunology 10 (4), 437-443, 2009
|Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics|
SA Ramsey, SL Klemm, DE Zak, KA Kennedy, V Thorsson, B Li, ...
PLoS computational biology 4 (3), e1000021, 2008
|Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites|
SA Ramsey, TA Knijnenburg, KA Kennedy, DE Zak, M Gilchrist, ES Gold, ...
Bioinformatics 26 (17), 2071-2075, 2010
|Control of parasitophorous vacuole expansion by LYST/Beige restricts the intracellular growth of Leishmania amazonensis|
J Wilson, C Huynh, KA Kennedy, DM Ward, J Kaplan, A Aderem, ...
PLoS pathogens 4 (10), e1000179, 2008
|Systems analysis identifies an essential role for SHANK-associated RH domain-interacting protein (SHARPIN) in macrophage Toll-like receptor 2 (TLR2) responses|
DE Zak, F Schmitz, ES Gold, AH Diercks, JJ Peschon, JS Valvo, ...
Proceedings of the National Academy of Sciences 108 (28), 11536-11541, 2011
|A new triggering receptor expressed on myeloid cells (Trem) family member, Trem-like 4, binds to dead cells and is a DNAX activation protein 12-linked marker for subsets of …|
H Hemmi, J Idoyaga, K Suda, N Suda, K Kennedy, M Noda, A Aderem, ...
The Journal of Immunology 182 (3), 1278-1286, 2009
|MalK Forms a Dimer Independent of Its Assembly into the MalFGK2 ATP-binding Cassette Transporter ofEscherichia coli|
KA Kennedy, B Traxler
Journal of Biological Chemistry 274 (10), 6259-6264, 1999
|Leishmania promotes its own virulence by inducing expression of the host immune inhibitory ligand CD200|
M Cortez, C Huynh, MC Fernandes, KA Kennedy, A Aderem, ...
Cell host & microbe 9 (6), 463-471, 2011
|The innate immune database (IIDB)|
M Korb, AG Rust, V Thorsson, C Battail, B Li, D Hwang, KA Kennedy, ...
BMC immunology 9 (1), 7, 2008
|Eukaryotic cell uptake of heparin-coated microspheres: a model of host cell invasion by Chlamydia trachomatis|
RS Stephens, FS Fawaz, KA Kennedy, K Koshiyama, B Nichols, ...
Infection and immunity 68 (3), 1080-1085, 2000
|Workshop on in vitro neutralization of Chlamydia trachomatis: summary of proceedings|
GI Byrne, RS Stephens, G Ada, HD Caldwell, H Su, RP Morrison, ...
Journal of Infectious Diseases 168 (2), 415-420, 1993
|Multiscale representation of genomic signals|
TA Knijnenburg, SA Ramsey, BP Berman, KA Kennedy, AFA Smit, ...
Nature methods 11 (6), 689, 2014
|Evidence for multiple pathways in the assembly of the Escherichia coli maltose transport complex|
KA Kennedy, EG Gachelet, B Traxler
Journal of Biological Chemistry 279 (32), 33290-33297, 2004
|Identifying novel transcription factors involved in the inflammatory response by using binding site motif scanning in genomic regions defined by histone acetylation|
PS Askovich, SA Ramsey, AH Diercks, KA Kennedy, TA Knijnenburg, A Aderem
PLoS One 12 (9), e0184850, 2017
|Application of systems biology to identify predictors of HIV vaccine immunogenicity|
D Zak, J Kupko, E Andersen-Nissen, H Park, S Hansen, K Mullen, ...
AIDS RESEARCH AND HUMAN RETROVIRUSES 24, 28-28, 2008
|Assembly of the maltose transport complex of Escherichia coli and the dimerization, localization, and functional domain structure of its ATP-binding subunit, MalK|
University of Washington, 1999