| SARS-CoV-2 evolution during treatment of chronic infection SA Kemp, DA Collier, RP Datir, IATM Ferreira, S Gayed, A Jahun, ... Nature 592 (7853), 277-282, 2021 | 1181* | 2021 |
| Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites AJ Reid, AM Talman, HM Bennett, AR Gomes, MJ Sanders, ... elife 7, e33105, 2018 | 248 | 2018 |
| FXR inhibition may protect from SARS-CoV-2 infection by reducing ACE2 T Brevini, M Maes, GJ Webb, BV John, CD Fuchs, G Buescher, L Wang, ... Nature 615 (7950), 134-142, 2023 | 230 | 2023 |
| High-definition reconstruction of clonal composition in cancer A Fischer, I Vázquez-García, CJR Illingworth, V Mustonen Cell reports 7 (5), 1740-1752, 2014 | 197 | 2014 |
| High-resolution mapping of complex traits with a four-parent advanced intercross yeast population FA Cubillos, L Parts, F Salinas, A Bergström, E Scovacricchi, A Zia, ... Genetics 195 (3), 1141-1155, 2013 | 141 | 2013 |
| EMu: probabilistic inference of mutational processes and their localization in the cancer genome A Fischer, CJR Illingworth, PJ Campbell, V Mustonen Genome biology 14, 1-10, 2013 | 137 | 2013 |
| Population genomic and evolutionary modelling analyses reveal a single major QTL for ivermectin drug resistance in the pathogenic nematode, Haemonchus contortus SR Doyle, CJR Illingworth, R Laing, DJ Bartley, E Redman, A Martinelli, ... BMC genomics 20, 1-19, 2019 | 102 | 2019 |
| In vitro selection of miltefosine resistance in promastigotes of Leishmania donovani from Nepal: genomic and metabolomic characterization CD Shaw, J Lonchamp, T Downing, H Imamura, TM Freeman, JA Cotton, ... Molecular microbiology 99 (6), 1134-1148, 2016 | 84 | 2016 |
| Quantifying selection acting on a complex trait using allele frequency time series data CJR Illingworth, L Parts, S Schiffels, G Liti, V Mustonen Molecular biology and evolution 29 (4), 1187-1197, 2012 | 73 | 2012 |
| Criteria for confirming sequence periodicity identified by Fourier transform analysis: application to GCR2, a candidate plant GPCR? CJR Illingworth, KE Parkes, CR Snell, PM Mullineaux, CA Reynolds Biophysical chemistry 133 (1-3), 28-35, 2008 | 73 | 2008 |
| Measurements of intrahost viral diversity require an unbiased diversity metric L Zhao, CJR Illingworth Virus Evolution 5 (1), vey041, 2019 | 63 | 2019 |
| Classical polarization in hybrid QM/MM methods CJR Illingworth, SR Gooding, PJ Winn, GA Jones, GG Ferenczy, ... The Journal of Physical Chemistry A 110 (20), 6487-6497, 2006 | 63 | 2006 |
| Addicted? Reduced host resistance in populations with defensive symbionts J Martinez, R Cogni, C Cao, S Smith, CJR Illingworth, FM Jiggins Proceedings of the Royal Society B: Biological Sciences 283 (1833), 20160778, 2016 | 57 | 2016 |
| Identifying selection in the within-host evolution of influenza using viral sequence data CJR Illingworth, A Fischer, V Mustonen PLoS computational biology 10 (7), e1003755, 2014 | 57 | 2014 |
| Superspreaders drive the largest outbreaks of hospital onset COVID-19 infections CJR Illingworth, WL Hamilton, B Warne, M Routledge, A Popay, ... elife 10, e67308, 2021 | 56 | 2021 |
| The effective rate of influenza reassortment is limited during human infection A Sobel Leonard, MT McClain, GJD Smith, DE Wentworth, RA Halpin, ... PLoS pathogens 13 (2), e1006203, 2017 | 55 | 2017 |
| Distinguishing driver and passenger mutations in an evolutionary history categorized by interference CJR Illingworth, V Mustonen Genetics 189 (3), 989-1000, 2011 | 54 | 2011 |
| Assessing the role of polarization in docking CJR Illingworth, GM Morris, KEB Parkes, CR Snell, CA Reynolds The Journal of Physical Chemistry A 112 (47), 12157-12163, 2008 | 53 | 2008 |
| Computational studies of family A and family B GPCRs S Vohra, SV Chintapalli, CJR Illingworth, PJ Reeves, PM Mullineaux, ... Biochemical Society Transactions 35 (4), 749-754, 2007 | 52 | 2007 |
| Many-body effects and simulations of potassium channels CJ Illingworth, C Domene Proceedings of the Royal Society A: Mathematical, Physical and Engineering …, 2009 | 51 | 2009 |
Ville MustonenUniversity of HelsinkiVerified email at helsinki.fi
