Alan M Moses

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Alex N Nguyen BaAssistant Professor, University of TorontoVerified email at utoronto.ca
Michael B. EisenInvestigator, HHMI and Associate Professor of Molecular and Cell Biology, UC BerkeleyVerified email at berkeley.edu
Brenda AndrewsDirector, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Richard DurbinDept of Genetics, University of CambridgeVerified email at cam.ac.uk
Taraneh ZarinPostdoctoral Researcher, Centre for Genomic RegulationVerified email at crg.eu
Alex LuMicrosoft ResearchVerified email at microsoft.com
Julie D Forman-KayHospital for Sick Children; University of TorontoVerified email at sickkids.ca
Edward J LouisProfessor of Genetics, University of LeicesterVerified email at le.ac.uk
Gianni LitiIRCAN, CNRS, INSERM, Université Côte d'Azur, University of NiceVerified email at unice.fr
Daniel PollardWestern Washington UniversityVerified email at wwu.edu
Iva PritišanacPostdoctoral Fellow, The Hospital for Sick Children, TorontoVerified email at sickkids.ca
Amin Zia, PhDStealth companyVerified email at dycode.bio
Venky Iyer Nandagopalex-UC Berkeley, ex-Facebook, ex-FinVerified email at berkeley.edu
Derek ChiangBayerVerified email at bayer.com
Jonas WarringerUniversity of GothenburgVerified email at cmb.gu.se
Jared SimpsonOntario Institute for Cancer ResearchVerified email at oicr.on.ca
Nicholas ProvartProfessor and Departmental Chair, Cell & Systems Biology, University of TorontoVerified email at utoronto.ca
Ian Shenyen HsuPhD, Department of Cell & System Biology, University of TorontoVerified email at mail.utoronto.ca
Francisco A. CubillosUniversidad de Santiago de ChileVerified email at usach.cl
Leopold PartsFaculty at Wellcome Sanger Institute; Senior Researcher (part-time) at University of TartuVerified email at sanger.ac.uk

Alan M Moses

Professor, University of Toronto

Verified email at utoronto.ca - Homepage

Computational Biology Molecular Evolution Bioinformatics Regulatory Networks Systems Biology


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Population genomics of domestic and wild yeasts G Liti, DM Carter, AM Moses, J Warringer, L Parts, SA James, RP Davey, ... Nature 458 (7236), 337-341, 2009	1696	2009
In vivo enhancer analysis of human conserved non-coding sequences LA Pennacchio, N Ahituv, AM Moses, S Prabhakar, MA Nobrega, ... Nature 444 (7118), 499-502, 2006	1364	2006
NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction AN Nguyen Ba, A Pogoutse, N Provart, AM Moses BMC bioinformatics 10, 1-11, 2009	726	2009
Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting DA Pollard, VN Iyer, AM Moses, MB Eisen PLoS genetics 2 (10), e173, 2006	441	2006
Trait variation in yeast is defined by population history J Warringer, E Zörgö, FA Cubillos, A Zia, A Gjuvsland, JT Simpson, ... PLoS genetics 7 (6), e1002111, 2011	401	2011
An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions A Haudry, AE Platts, E Vello, DR Hoen, M Leclercq, RJ Williamson, ... Nature genetics 45 (8), 891-898, 2013	397	2013
TreeFam: 2008 update J Ruan, H Li, Z Chen, A Coghlan, LJM Coin, Y Guo, JK Heriche, Y Hu, ... Nucleic acids research 36 (suppl_1), D735-D740, 2007	383	2007
Yeast proteome dynamics from single cell imaging and automated analysis YT Chong, JLY Koh, H Friesen, SK Duffy, MJ Cox, A Moses, J Moffat, ... Cell 161 (6), 1413-1424, 2015	338	2015
A high-definition view of functional genetic variation from natural yeast genomes A Bergström, JT Simpson, F Salinas, B Barré, L Parts, A Zia, ... Molecular biology and evolution 31 (4), 872-888, 2014	320	2014
Large-Scale Turnover of Functional Transcription Factor Binding Sites in Drosophila AM Moses, DA Pollard, DA Nix, VN Iyer, XY Li, MD Biggin, MB Eisen PLoS computational biology 2 (10), e130, 2006	308	2006
Revealing the genetic structure of a trait by sequencing a population under selection L Parts, FA Cubillos, J Warringer, K Jain, F Salinas, SJ Bumpstead, ... Genome research 21 (7), 1131-1138, 2011	289	2011
Conservation and Evolution of Cis-Regulatory Systems in Ascomycete Fungi AP Gasch, AM Moses, DY Chiang, HB Fraser, M Berardini, MB Eisen PLoS biology 2 (12), e398, 2004	284	2004
Short linear motifs – ex nihilo evolution of protein regulation NE Davey, MS Cyert, AM Moses Cell Communication and Signaling 13, 1-15, 2015	222	2015
Position specific variation in the rate of evolution in transcription factor binding sites AM Moses, DY Chiang, M Kellis, ES Lander, MB Eisen BMC evolutionary biology 3, 1-13, 2003	209	2003
MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model AM Moses, DY Chiang, DA Pollard, VN Iyer, MB Eisen Genome biology 5, 1-15, 2004	206	2004
Phase separation as a missing mechanism for interpretation of disease mutations B Tsang, I Pritišanac, SW Scherer, AM Moses, JD Forman-Kay Cell 183 (7), 1742-1756, 2020	205	2020
Condensation of Ded1p promotes a translational switch from housekeeping to stress protein production C Iserman, CD Altamirano, C Jegers, U Friedrich, T Zarin, AW Fritsch, ... Cell 181 (4), 818-831. e19, 2020	190	2020
Evidence for widespread adaptive evolution of gene expression in budding yeast HB Fraser, AM Moses, EE Schadt Proceedings of the National Academy of Sciences 107 (7), 2977-2982, 2010	177	2010
Proteome-wide signatures of function in highly diverged intrinsically disordered regions T Zarin, B Strome, AN Nguyen Ba, S Alberti, JD Forman-Kay, AM Moses Elife 8, e46883, 2019	167	2019
A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis S Lumba, S Toh, LF Handfield, M Swan, R Liu, JY Youn, SR Cutler, ... Developmental Cell 29 (3), 360-372, 2014	140	2014

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