Hamid Ashrafi
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The Sorghum bicolor genome and the diversification of grasses
AH Paterson, JE Bowers, R Bruggmann, I Dubchak, J Grimwood, ...
Nature 457 (7229), 551-556, 2009
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
AH Paterson, JF Wendel, H Gundlach, H Guo, J Jenkins, D Jin, ...
Nature 492 (7429), 423-427, 2012
Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species
S Kim, M Park, SI Yeom, YM Kim, JM Lee, HA Lee, E Seo, J Choi, ...
Nature genetics 46 (3), 270-278, 2014
Uniform ripening encodes a Golden 2-like transcription factor regulating tomato fruit chloroplast development
ALT Powell, CV Nguyen, T Hill, KLL Cheng, R Figueroa-Balderas, ...
Science 336 (6089), 1711-1715, 2012
A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution
M Iorizzo, S Ellison, D Senalik, P Zeng, P Satapoomin, J Huang, ...
Nature genetics 48 (6), 657-666, 2016
De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity
M Iorizzo, DA Senalik, D Grzebelus, M Bowman, PF Cavagnaro, ...
BMC genomics 12 (1), 1-14, 2011
Genetics, genomics and breeding of late blight and early blight resistance in tomato
MR Foolad, HL Merk, H Ashrafi
Critical Reviews in Plant Sciences 27 (2), 75-107, 2008
Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.
AM Hulse-Kemp, J Lemm, J Plieske, H Ashrafi, R Buyyarapu, DD Fang, ...
G3: Genes, Genomes, Genetics 5 (6), 1187-1209, 2015
Characterization of Capsicum annuum genetic diversity and population structure based on parallel polymorphism discovery with a 30K unigene Pepper GeneChip
TA Hill, H Ashrafi, S Reyes-Chin-Wo, JQ Yao, K Stoffel, MJ Truco, A Kozik, ...
PloS one 8 (2), e56200, 2013
De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes
H Ashrafi, T Hill, K Stoffel, A Kozik, JQ Yao, SR Chin-Wo, A Van Deynze
BMC genomics 13 (1), 1-15, 2012
An ultra-high-density, transcript-based, genetic map of lettuce
MJ Truco, H Ashrafi, A Kozik, H Van Leeuwen, J Bowers, SRC Wo, ...
G3: Genes, Genomes, Genetics 3 (4), 617-631, 2013
Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing
JT Page, MD Huynh, ZS Liechty, K Grupp, D Stelly, AM Hulse, H Ashrafi, ...
G3: Genes, Genomes, Genetics 3 (10), 1809-1818, 2013
Identification of QTLs for capsaicinoids, fruit quality, and plant architecture-related traits in an interspecific Capsicum RIL population
SC Yarnes, H Ashrafi, S Reyes-Chin-Wo, TA Hill, KM Stoffel, ...
Genome 56 (1), 61-74, 2013
A new genetic linkage map of tomato based on a Solanum lycopersicum × S. pimpinellifolium RIL population displaying locations of candidate pathogen response …
H Ashrafi, M Kinkade, MR Foolad
Genome 52 (11), 935-956, 2009
Selective genotyping to identify late blight resistance genes in an accession of the tomato wild species Solanum pimpinellifolium
HL Merk, H Ashrafi, MR Foolad
Euphytica 187 (1), 63-75, 2012
Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.)
K Stoffel, H van Leeuwen, A Kozik, D Caldwell, H Ashrafi, X Cui, X Tan, ...
BMC genomics 13 (1), 1-17, 2012
A HapMap leads to a Capsicum annuum SNP infinium array: a new tool for pepper breeding
AM Hulse-Kemp, H Ashrafi, J Plieske, J Lemm, K Stoffel, T Hill, ...
Horticulture research 3 (1), 1-10, 2016
A Solanum lycopersicum× Solanum pimpinellifolium linkage map of tomato displaying genomic locations of R-genes, RGAs, and candidate resistance/defense-response ESTs
A Sharma, L Zhang, D Niño-Liu, H Ashrafi, MR Foolad
International journal of plant genomics 2008, 2008
Identification of novel quantitative trait loci for increased lycopene content and other fruit quality traits in a tomato recombinant inbred line population
H Ashrafi, MP Kinkade, HL Merk, MR Foolad
Molecular breeding 30 (1), 549-567, 2012
CaDMR1 Cosegregates with QTL Pc5.1 for Resistance to Phytophthora capsici in Pepper (Capsicum annuum)
WZ Rehrig, H Ashrafi, T Hill, J Prince, A Van Deynze
The Plant Genome 7 (2), plantgenome2014.03.0011, 2014
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