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Maxim Dudnikov
Maxim Dudnikov
All-Russia Research Institute of Agricultural Biotechnology
Verified email at iab.ac.ru
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Year
The use of molecular markers in wheat breeding at the Lukyanenko Agricultural Research Institute
LA Bespalova, AV Vasilyev, IB Ablova, VA Filobok, ZN Khudokormova, ...
Russian Journal of Genetics: Applied Research 2, 286-290, 2012
252012
Nanopore RNA Sequencing Revealed Long Non-Coding and LTR Retrotransposon-Related RNAs Expressed at Early Stages of Triticale SEED Development
I Kirov, M Dudnikov, P Merkulov, A Shingaliev, M Omarov, E Kolganova, ...
Plants 9 (12), 1794, 2020
212020
Genomic and transcriptomic survey provides new insight into the organization and transposition activity of highly expressed LTR retrotransposons of sunflower (Helianthus annuus l.)
I Kirov, M Omarov, P Merkulov, M Dudnikov, S Gvaramiya, E Kolganova, ...
International journal of molecular sciences 21 (23), 9331, 2020
142020
Transposons Hidden in Arabidopsis thaliana Genome Assembly Gaps and Mobilization of Non-Autonomous LTR Retrotransposons Unravelled by Nanotei Pipeline
I Kirov, P Merkulov, M Dudnikov, E Polkhovskaya, RA Komakhin, ...
Plants 10 (12), 2681, 2021
102021
Searching for a needle in a haystack: Cas9-targeted Nanopore sequencing and DNA methylation profiling of full-length glutenin genes in a big cereal genome
I Kirov, E Polkhovskaya, M Dudnikov, P Merkulov, A Vlasova, G Karlov, ...
Plants 11 (1), 5, 2021
92021
Analysis of Wheat Bread-Making Gene (wbm) Evolution and Occurrence in Triticale Collection Reveal Origin via Interspecific Introgression into Chromosome 7AL
I Kirov, A Pirsikov, N Milyukova, M Dudnikov, M Kolenkov, I Gruzdev, ...
Agronomy 9 (12), 854, 2019
92019
Functional Allium fistulosum centromeres comprise arrays of a long satellite repeat, insertions of retrotransposons and chloroplast DNA
I Kirov, S Odintsov, M Omarov, S Gvaramiya, P Merkulov, M Dudnikov, ...
Frontiers in Plant Science 11, 562001, 2020
72020
Illuminating the plant transposon insertion landscape in real time using Cas9-targeted Nanopore sequencing and a novel pipeline
I Kirov, P Merkulov, S Gvaramiya, R Komakhin, M Omarov, M Dudnikov, ...
BioRxiv, 2021.06. 11.448052, 2021
62021
Analysis of spring triticale collection for leaf rust resistance genes with PCR markers
PY Kroupin, IV Gruzdev, MG Divashuk, MS Bazhenov, AA Kocheshkova, ...
Russian Journal of Genetics 55, 945-954, 2019
52019
A Pipeline NanoTRF as a New Tool for De Novo Satellite DNA Identification in the Raw Nanopore Sequencing Reads of Plant Genomes
I Kirov, E Kolganova, M Dudnikov, OY Yurkevich, AV Amosova, ...
Plants 11 (16), 2103, 2022
42022
Use of molecular markers in wheat breeding at the Krasnodar Lukyanenko Research Institute of Agriculture
LA Bespalova, AV Vasilyev, IB Ablova, VA Filobok, ZN Khudokormova, ...
Vavilov Journal of Genetics and Breeding 16 (1), 37-43, 2014
42014
Cas9‐targeted Nanopore sequencing rapidly elucidates the transposition preferences and DNA methylation profiles of mobile elements in plants
P Merkulov, S Gvaramiya, M Dudnikov, R Komakhin, M Omarov, ...
Journal of Integrative Plant Biology 65 (10), 2242-2261, 2023
22023
Epigenetic Stress and Long-Read cDNA Sequencing of Sunflower (Helianthus annuus L.) Revealed the Origin of the Plant Retrotranscriptome
I Kirov, P Merkulov, E Polkhovskaya, Z Konstantinov, M Kazancev, ...
Plants 11 (24), 3579, 2022
22022
Long-Read CDNA Sequencing Revealed Novel Expressed Genes and Dynamic Transcriptome Landscape of Triticale (x Triticosecale Wittmack) Seed at Different Developing Stages
E Polkhovskaya, A Bolotina, P Merkulov, M Dudnikov, A Soloviev, I Kirov
Agronomy 13 (2), 292, 2023
12023
Эпигенетический стресс и секвенирование длинными прочтениями кДНК подсолнечника (Helianthus annuus L.) выявили происхождение ретротранскриптома растения
IV Kirov, PY Merkulov, ES Polkhovskaya, ZS Konstantinov, MN Kazantsev, ...
Plants 11 (24), 3579-3579, 2022
2022
Breakthroughs in plant retrotranscriptome and mobilome characterization enabled by Nanopore sequencing
I Kirov, P Merkulov, S Gvaramiya, M Omarov, M Dudnikov, E Kolganova, ...
Plant Genetics, Genomics, Bioinformatics, and Biotechnology, 113-113, 2021
2021
Identification and variation analysis of long non-coding RNA genes expressed at early stages of seed development in Triticale
M Dudnikov, M Kovlagina, A Soloviev, I Kirov
Plant Genetics, Genomics, Bioinformatics, and Biotechnology, 59-59, 2021
2021
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