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Joshua T Berryman
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Deciphering drift time measurements from travelling wave ion mobility spectrometry-mass spectrometry studies
DP Smith, TW Knapman, I Campuzano, RW Malham, JT Berryman, ...
European journal of mass spectrometry 15 (2), 113-130, 2009
4162009
AMBER 2018, University of California, San Francisco, 2018
DA Case, JT Berryman, RM Betz, DS Cerutti, TE Cheatham III, TA Darden, ...
There is no corresponding record for this reference, 2015
2532015
AMBER 14; University of California: San Francisco, 2014
DA Case, V Babin, JT Berryman, RM Betz, Q Cai, DS Cerutti, ...
There is no corresponding record for this reference, 1-826, 2014
2492014
AMBER 14. 2014
DA Case, V Babin, J Berryman, RM Betz, Q Cai, DS Cerutti, ...
University of California, San Francisco, 2014
1122014
Considerations in experimental and theoretical collision cross-section measurements of small molecules using travelling wave ion mobility spectrometry-mass spectrometry
TW Knapman, JT Berryman, I Campuzano, SA Harris, AE Ashcroft
International journal of mass spectrometry 298 (1-3), 17-23, 2010
1112010
Competition between crystal and fibril formation in molecular mutations of amyloidogenic peptides
NP Reynolds, J Adamcik, JT Berryman, S Handschin, AAH Zanjani, W Li, ...
Nature communications 8 (1), 1338, 2017
1102017
ILQINS hexapeptide, identified in lysozyme left-handed helical ribbons and nanotubes, forms right-handed helical ribbons and crystals
C Lara, NP Reynolds, JT Berryman, A Xu, A Zhang, R Mezzenga
Journal of the American Chemical Society 136 (12), 4732-4739, 2014
962014
Neurotoxic amyloidogenic peptides in the proteome of SARS-COV2: potential implications for neurological symptoms in COVID-19
M Charnley, S Islam, GK Bindra, J Engwirda, J Ratcliffe, J Zhou, ...
Nature communications 13 (1), 3387, 2022
762022
Crystal nucleation mechanism in melts of short polymer chains under quiescent conditions and under shear flow
M Anwar, JT Berryman, T Schilling
The Journal of Chemical Physics 141 (12), 2014
692014
Systematic examination of polymorphism in amyloid fibrils by molecular-dynamics simulation
JT Berryman, SE Radford, SA Harris
Biophysical Journal 100 (9), 2234-2242, 2011
612011
Sampling rare events in nonequilibrium and nonstationary systems
JT Berryman, T Schilling
The Journal of chemical physics 133 (24), 2010
592010
Thermodynamic description of polymorphism in Q-and N-rich peptide aggregates revealed by atomistic simulation
JT Berryman, SE Radford, SA Harris
Biophysical journal 97 (1), 1-11, 2009
582009
Darden
DA Case, V Babin, JT Berryman, RM Betz, Q Cai, DS Cerutti, ...
Gohlke, H., Luo, R., Merz, KM Jr., Onufriev, A., Simmerling, C., Wang, B …, 2018
44*2018
AMBER 22 reference manual
DA Case, RE Duke, RC Walker, NR Skrynnikov, TE Cheatham III, ...
University of California, San Francisco, United States-California, 2022
392022
Walker
DA Case, V Babin, JT Berryman, RM Betz, Q Cai, DS Cerutti, ...
Wang, J, 18
3118
The early crystal nucleation process in hard spheres shows synchronised ordering and densification
JT Berryman, M Anwar, S Dorosz, T Schilling
The Journal of chemical physics 145 (21), 2016
292016
AMBER 142014University of California
DA Case, V Babin, JT Berryman, RM Betz, Q Cai, DS Cerutti, ...
San Francisco, 0
26
Evolution of conformation, nanomechanics, and infrared nanospectroscopy of single amyloid fibrils converting into microcrystals
J Adamcik, FS Ruggeri, JT Berryman, A Zhang, TPJ Knowles, ...
Advanced Science 8 (2), 2002182, 2021
242021
The flexible rare event sampling harness system (freshs)
K Kratzer, JT Berryman, A Taudt, J Zeman, A Arnold
Computer Physics Communications 185 (7), 1875-1885, 2014
242014
Amyloid evolution: antiparallel replaced by parallel
AAH Zanjani, NP Reynolds, A Zhang, T Schilling, R Mezzenga, ...
Biophysical journal 118 (10), 2526-2536, 2020
222020
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Articles 1–20