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Ari Löytynoja
Ari Löytynoja
PI, Institute of Biotechnology, University of Helsinki
Verified email at helsinki.fi - Homepage
Title
Cited by
Cited by
Year
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
ENCODE Project Consortium
Nature 447 (7146), 799, 2007
57012007
An algorithm for progressive multiple alignment of sequences with insertions
A Löytynoja, N Goldman
Proceedings of the National Academy of Sciences 102 (30), 10557-10562, 2005
9732005
Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis
A Löytynoja, N Goldman
Science 320 (5883), 1632-1635, 2008
8092008
Phylogeny-aware alignment with PRANK
A Löytynoja
Multiple Sequence Alignment Methods, 155-170, 2014
4602014
webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser
A Löytynoja, N Goldman
BMC bioinformatics 11 (1), 1-7, 2010
3862010
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
EH Margulies, GM Cooper, G Asimenos, DJ Thomas, CN Dewey, A Siepel, ...
Genome research 17 (6), 760-774, 2007
2402007
Matrilinear phylogeography of Atlantic salmon (Salmo salar L.) in Europe and postglacial colonization of the Baltic Sea area
J Nilsson, R Gross, T Asplund, O Dove, H Jansson, J Kelloniemi, ...
Molecular Ecology 10 (1), 89-102, 2001
2132001
A hidden Markov model for progressive multiple alignment
A Löytynoja, MC Milinkovitch
Bioinformatics 19 (12), 1505-1513, 2003
1882003
SOAP, cleaning multiple alignments from unstable blocks
A Löytynoja, MC Milinkovitch
Bioinformatics 17 (6), 573-574, 2001
1652001
Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm
A Löytynoja, AJ Vilella, N Goldman
Bioinformatics 28 (13), 1684-1691, 2012
1372012
An inducible genome editing system for plants
X Wang, L Ye, M Lyu, R Ursache, A Löytynoja, AP Mähönen
Nature plants 6 (7), 766-772, 2020
572020
A model of evolution and structure for multiple sequence alignment
A Löytynoja, N Goldman
Philosophical Transactions of the Royal Society B: Biological Sciences 363 …, 2008
562008
Mechanistic insights into the evolution of DUF26-containing proteins in land plants
A Vaattovaara, B Brandt, S Rajaraman, O Safronov, A Veidenberg, ...
Communications biology 2 (1), 1-18, 2019
462019
Wasabi: an integrated platform for evolutionary sequence analysis and data visualization
A Veidenberg, A Medlar, A Löytynoja
Molecular biology and evolution 33 (4), 1126-1130, 2016
462016
Genome content of uncultivated marine Roseobacters in the surface ocean
H Luo, A Löytynoja, MA Moran
Environmental microbiology 14 (1), 41-51, 2012
462012
A High-Quality Assembly of the Nine-Spined Stickleback (Pungitius pungitius) Genome
S Varadharajan, P Rastas, A Löytynoja, M Matschiner, FCF Calboli, ...
Genome biology and evolution 11 (11), 3291-3308, 2019
422019
Molecular phylogenetic analyses of the mitochondrial ADP-ATP carriers: The Plantae/Fungi/Metazoa trichotomy revisited
A Löytynoja, MC Milinkovitch
Proceedings of the National Academy of Sciences 98 (18), 10202-10207, 2001
422001
MATLIGN: a motif clustering, comparison and matching tool
M Kankainen, A Löytynoja
BMC bioinformatics 8 (1), 1-7, 2007
352007
Uniting alignments and trees
A Löytynoja, N Goldman
Science 324 (5934), 1528-1529, 2009
322009
A recurrent copy number variation of the NEB triplicate region: only revealed by the targeted nemaline myopathy CGH array
K Kiiski, VL Lehtokari, A Löytynoja, L Ahlstén, J Laitila, ...
European Journal of Human Genetics 24 (4), 574-580, 2016
292016
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