| Cell elongation is key to in silico replication of in vitro vasculogenesis and subsequent remodeling RMH Merks, SV Brodsky, MS Goligorksy, SA Newman, JA Glazier Developmental biology 289 (1), 44-54, 2006 | 314 | 2006 |
| A cell-centered approach to developmental biology RMH Merks, JA Glazier Physica A: Statistical Mechanics and its Applications 352 (1), 113-130, 2005 | 314 | 2005 |
| Endothelial microparticles affect angiogenesis in vitro: role of oxidative stress A Mezentsev, RMH Merks, E O'Riordan, J Chen, N Mendelev, ... American Journal of Physiology-Heart and Circulatory Physiology 289 (3 …, 2005 | 308 | 2005 |
| Contact-inhibited chemotaxis in de novo and sprouting blood-vessel growth RMH Merks, ED Perryn, A Shirinifard, JA Glazier PLoS computational biology 4 (9), e1000163, 2008 | 265 | 2008 |
| Cellular potts modeling of tumor growth, tumor invasion, and tumor evolution A Szabó, RMH Merks Frontiers in oncology 3, 87, 2013 | 242 | 2013 |
| Mechanical cell-matrix feedback explains pairwise and collective endothelial cell behavior in vitro RFM van Oers, EG Rens, DJ LaValley, CA Reinhart-King, RMH Merks PLoS computational biology 10 (8), e1003774, 2014 | 206 | 2014 |
| VirtualLeaf: an open-source framework for cell-based modeling of plant tissue growth and development RMH Merks, M Guravage, D Inzé, GTS Beemster Plant physiology 155 (2), 656-666, 2011 | 184 | 2011 |
| Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling K Wabnik, J Kleine‐Vehn, J Balla, M Sauer, S Naramoto, V Reinöhl, ... Molecular systems biology 6 (1), 447, 2010 | 161 | 2010 |
| Glycolytic regulation of cell rearrangement in angiogenesis B Cruys, BW Wong, A Kuchnio, D Verdegem, AR Cantelmo, LC Conradi, ... Nature communications 7 (1), 12240, 2016 | 156 | 2016 |
| Redox balance is key to explaining full vs. partial switching to low-yield metabolism MJA van Hoek, RMH Merks BMC systems biology 6, 1-10, 2012 | 151 | 2012 |
| Canalization without flux sensors: a traveling-wave hypothesis RMH Merks, Y Van de Peer, D Inzé, GTS Beemster Trends in plant science 12 (9), 384-390, 2007 | 135 | 2007 |
| A cell-based model of extracellular-matrix-guided endothelial cell migration during angiogenesis JT Daub, RMH Merks Bulletin of mathematical biology 75, 1377-1399, 2013 | 133 | 2013 |
| Cellular Potts modeling of complex multicellular behaviors in tissue morphogenesis T Hirashima, EG Rens, RMH Merks Development, growth & differentiation 59 (5), 329-339, 2017 | 125 | 2017 |
| Dynamic mechanisms of blood vessel growth RMH Merks, JA Glazier Nonlinearity 19 (1), C1, 2005 | 121 | 2005 |
| SHORT-ROOT and SCARECROW regulate leaf growth in Arabidopsis by stimulating S-phase progression of the cell cycle S Dhondt, F Coppens, F De Winter, K Swarup, RMH Merks, D Inzé, ... Plant Physiology 154 (3), 1183-1195, 2010 | 119 | 2010 |
| Emergence of microbial diversity due to cross-feeding interactions in a spatial model of gut microbial metabolism MJA Hoek, RMH Merks BMC systems biology 11, 1-18, 2017 | 113 | 2017 |
| Morphogenesis of the branching reef coral Madracis mirabilis JA Kaandorp, PMA Sloot, RMH Merks, RPM Bak, MJA Vermeij, C Maier Proceedings of the Royal Society B: Biological Sciences 272 (1559), 127-133, 2005 | 108 | 2005 |
| Modeling lignin polymerization. I. Simulation model of dehydrogenation polymers FRD van Parijs, K Morreel, J Ralph, W Boerjan, RMH Merks Plant physiology 153 (3), 1332-1344, 2010 | 101 | 2010 |
| Modeling morphogenesis in silico and in vitro: towards quantitative, predictive, cell-based modeling RMH Merks, P Koolwijk Mathematical Modelling of Natural Phenomena 4 (4), 149-171, 2009 | 89 | 2009 |
| Cell shape and durotaxis explained from cell-extracellular matrix forces and focal adhesion dynamics EG Rens, RMH Merks Iscience 23 (9), 2020 | 88 | 2020 |
James A GlazierIndiana UniversityVerified email at indiana.edu
