| Revised RNA dihedral parameters for the amber force field improve RNA molecular dynamics AH Aytenfisu, A Spasic, A Grossfield, HA Stern, DH Mathews Journal of chemical theory and computation 13 (2), 900-915, 2017 | 112 | 2017 |
| Modeling RNA secondary structure folding ensembles using SHAPE mapping data A Spasic, SM Assmann, PC Bevilacqua, DH Mathews Nucleic acids research 46 (1), 314-323, 2018 | 95 | 2018 |
| Compact and Ordered Collapse of Randomly Generated RNA Sequences E Schultes, A Spasic, U Mohanty, D Bartel Nature and Structural Biology 12, 1130-1136, 2005 | 92 | 2005 |
| DNA duplex formation with a coarse-grained model M Maciejczyk, A Spasic, A Liwo, HA Scheraga Journal of chemical theory and computation 10 (11), 5020-5035, 2014 | 47 | 2014 |
| The Amber ff99 force field predicts relative free energy changes for RNA helix formation A Spasic, J Serafini, DH Mathews Journal of chemical theory and computation 8 (7), 2497-2505, 2012 | 47 | 2012 |
| Coarse‐grained model of nucleic acid bases M Maciejczyk, A Spasic, A Liwo, HA Scheraga Journal of computational chemistry 31 (8), 1644-1655, 2010 | 41 | 2010 |
| Improving RNA nearest neighbor parameters for helices by going beyond the two-state model A Spasic, KD Berger, JL Chen, MG Seetin, DH Turner, DH Mathews Nucleic Acids Research 46 (10), 4883-4892, 2018 | 22 | 2018 |
| Modified AMBER force field correctly models the conformational preference for tandem GA pairs in RNA AH Aytenfisu, A Spasic, MG Seetin, J Serafini, DH Mathews Journal of Chemical Theory and Computation 10 (3), 1292-1301, 2014 | 22 | 2014 |
| Cryo-Electron Microscopy Structure of the αIIbβ3-Abciximab Complex D Nešić, Y Zhang, A Spasic, J Li, D Provasi, M Filizola, T Walz, BS Coller Arteriosclerosis, Thrombosis, and Vascular Biology 40, 624-637, 2020 | 16 | 2020 |
| Chemically accurate relative folding stability of RNA hairpins from molecular simulations LG Smith, Z Tan, A Spasic, D Dutta, LA Salas-Estrada, A Grossfield, ... Journal of chemical theory and computation 14 (12), 6598-6612, 2018 | 15 | 2018 |
| Ion Atmosphere of Three-Way Junction Nucleic Acid U Mohanty, A Spasic, HD Kim, S Chu Journal of Physical Chemistry B 109, 21369- 21374, 2005 | 14 | 2005 |
| Molecular dynamics correctly models the unusual major conformation of the GAGU RNA internal loop and with NMR reveals an unusual minor conformation A Spasic, SD Kennedy, L Needham, M Manoharan, R Kierzek, DH Turner, ... Rna 24 (5), 656-672, 2018 | 11 | 2018 |
| Dynamics of Curved DNA molecules: Prediction and Experiment TE Haran, I Cohen, A Spasic, K Yang, U Mohanty Journal of the American Chemical Society 125, 11160-11161, 2003 | 9 | 2003 |
| Counterion condensation in nucleic acid A Spasic, U Mohanty Advances in Chemical Physics 139, 139-176, 2008 | 7 | 2008 |
| Characteristics of Migration Patterns of DNA Oligomers in Gels and the Relationship to the Question of Intrinsic DNA Bending TE Haran, I Cohen, A Spasic, K Yang, U Mohanty Journal of the American Chemical Society 126, 2372-2377, 2004 | 7 | 2004 |
| Gαs slow conformational transition upon GTP binding and a novel Gαs regulator D Ahn, D Provasi, NM Duc, J Xu, L Salas-Estrada, A Spasic, MW Yun, ... Iscience 26 (5), 2023 | 3 | 2023 |
| Electron microscopy shows that binding of monoclonal antibody PT25-2 primes integrin αIIbβ3 for ligand binding D Nešić, M Bush, A Spasic, J Li, T Kamata, M Handa, M Filizola, T Walz, ... Blood Advances 5 (7), 1781-1790, 2021 | 2 | 2021 |
| Polyelectrolyte behavior and kinetics of aminoacyl-tRNA on the ribosome A Spasic, S Sitha, M Korchak, S Chu, U Mohanty The Journal of Physical Chemistry B 112 (14), 4161-4163, 2008 | 2 | 2008 |
| The discovery of novel and potent indazole NLRP3 inhibitors enabled by DNA-encoded library screening G Hartman, P Humphries, R Hughes, A Ho, R Montgomery, A Deshpande, ... Bioorganic & Medicinal Chemistry Letters, 129675, 2024 | 1 | 2024 |
| Asymmetric Charge Neutralization of DNA. A Spasic, G Hess, KA Becker, M Hansen, R Bleil, U Mohanty ACS Symposium Series (Nucleic Acids: Curvature and Deformation) 884, 133-143, 2004 | 1 | 2004 |
David H. MathewsDepartment of Biochemistry and Biophysics, University of Rochester Medical CenterVerified email at urmc.rochester.edu
