Michael Charleston

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Stephen J. SimpsonThe University of SydneyVerified email at sydney.edu.au
Roderic D. M. PageProfessor of Taxonomy, IBAHCM, University of GlasgowVerified email at bio.gla.ac.uk
David RaubenheimerCharles Perkins Centre, University of SydneyVerified email at sydney.edu.au
Scott CarverSenior Lecturer, Wildlife Ecology, University of TasmaniaVerified email at utas.edu.au
Joshua Wing Kei HoAssociate Professor, The University of Hong KongVerified email at hku.hk
Jerome BuhlSenior Lecturer. The University of AdelaideVerified email at adelaide.edu.au
Mathieu LihoreauCNRS Researcher, CRCA-CBI (Univ. Toulouse)Verified email at univ-tlse3.fr
Edward C HolmesUniversity of SydneyVerified email at sydney.edu.au
Cris dos RemediosProfessor, Discipline of Anatomy, University of SydneyVerified email at sydney.edu.au
Michael HendyProfessor, Mathematics, Otago UniversityVerified email at maths.otago.ac.nz
Oliver PybusUniversity of Oxford / Royal Veterinary CollegeVerified email at zoo.ox.ac.uk
Benjamin DrinkwaterUniversity of SydneyVerified email at sydney.edu.au
Andrew RambautProfessor of Molecular Evolution, University of EdinburghVerified email at ed.ac.uk
David PennyProfessor of theoretical Biology, Massey UniversityVerified email at massey.ac.nz
Fiona J ClissoldThe University of SydneyVerified email at sydney.edu.au
Nick Fountain-JonesUniversity of TasmaniaVerified email at utas.edu.au
Jennifer Hoyal CuthillIADS Research Fellow, University of EssexVerified email at essex.ac.uk
Gregory SwordProfessor and Charles R. Parencia Chair of Cotton Entomology, Texas A&M UniversityVerified email at tamu.edu
Alistair M SeniorSenior Research Fellow, The University of SydneyVerified email at sydney.edu.au
sunetra guptaProfessor of Theoretical EpidemiologyVerified email at zoo.ox.ac.uk

Michael Charleston

University of Tasmania

Verified email at utas.edu.au

Evolution Coevolution Cophylogeny Bioinformatics Systems Biology


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The epidemic behavior of the hepatitis C virus OG Pybus, MA Charleston, S Gupta, A Rambaut, EC Holmes, PH Harvey Science 292 (5525), 2323-2325, 2001	513	2001
From gene to organismal phylogeny: reconciled trees and the gene tree/species tree problem RDM Page, MA Charleston Molecular Phylogenetics and Evolution 7 (2), 231-240, 1997	504	1997
Trees within trees: phylogeny and historical associations RDM Page, MA Charleston Trends in Ecology & Evolution 13 (9), 356-359, 1998	393	1998
Jungles: a new solution to the host/parasite phylogeny reconciliation problem MA Charleston Mathematical Biosciences 149 (2), 191-223, 1998	327	1998
Preferential host switching by primate lentiviruses can account for phylogenetic similarity with the primate phylogeny MA Charleston, DL Robertson Systematic Biology 51 (3), 528-535, 2002	273	2002
Insights into the evolutionary history of an emerging livestock pathogen: porcine circovirus 2 C Firth, MA Charleston, S Duffy, B Shapiro, EC Holmes Journal of virology 83 (24), 12813-12821, 2009	251	2009
Hantavirus evolution in relation to its rodent and insectivore hosts: no evidence for codivergence C Ramsden, EC Holmes, MA Charleston Molecular Biology and Evolution 26 (1), 143-153, 2009	242	2009
Host Switch Leads to Emergence of Plasmodium vivax Malaria in Humans J Mu, DA Joy, J Duan, Y Huang, J Carlton, J Walker, J Barnwell, P Beerli, ... Molecular biology and evolution 22 (8), 1686-1693, 2005	237	2005
Mathematical elegance with biochemical realism: the covarion model of molecular evolution D Penny, BJ McComish, MA Charleston, MD Hendy Journal of Molecular Evolution 53 (6), 711-723, 2001	203	2001
Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences V Deshpande, Q Wang, P Greenfield, M Charleston, A Porras-Alfaro, ... Mycologia 108 (1), 1-5, 2016	165	2016
Differential variability analysis of gene expression and its application to human diseases JWK Ho, M Stefani, CG Dos Remedios, MA Charleston Bioinformatics 24 (13), i390-i398, 2008	154	2008
A cophylogenetic perspective of RNA–virus evolution AP Jackson, MA Charleston Molecular Biology and Evolution 21 (1), 45-57, 2004	133	2004
Modelling nutritional interactions: from individuals to communities SJ Simpson, D Raubenheimer, MA Charleston, FJ Clissold Trends in Ecology & Evolution 25 (1), 53-60, 2010	131	2010
A covariotide model explains apparent phylogenetic structure of oxygenic photosynthetic lineages. PJ Lockhart, MA Steel, AC Barbrook, DH Huson, MA Charleston, ... Molecular Biology and Evolution 15 (9), 1183-1188, 1998	130	1998
Reconciled trees and incongruent gene and species trees RDM Page, MA Charleston Mathematical Hierarchies in Biology 37, 57-70, 1997	125	1997
Nutritional ecology beyond the individual: a conceptual framework for integrating nutrition and social interactions M Lihoreau, J Buhl, MA Charleston, GA Sword, D Raubenheimer, ... Ecology letters 18 (3), 273-286, 2015	101	2015
Traversing the tangle: algorithms and applications for cophylogenetic studies MA Charleston, SL Perkins Journal of Biomedical Informatics 39 (1), 62-71, 2006	83	2006
On the computational complexity of the reticulate cophylogeny reconstruction problem R Libeskind-Hadas, MA Charleston Journal of Computational Biology 16 (1), 105-117, 2009	76	2009
TreeEdit: phylogenetic tree editor A Rambaut, M Charleston Program distributed by the authors http://evolve zoo ox ac uk/software …, 2002	68*	2002
The effects of sequence length, tree topology, and number of taxa on the performance of phylogenetic methods MA Charleston, MD Hendy, D Penny Journal of Computational Biology 1 (2), 133-151, 1994	61	1994

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