|Are Escherichia coli pathotypes still relevant in the era of whole-genome sequencing?|
RM Robins-Browne, KE Holt, DJ Ingle, DM Hocking, J Yang, M Tauschek
Frontiers in cellular and infection microbiology 6, 141, 2016
|EspL is a bacterial cysteine protease effector that cleaves RHIM proteins to block necroptosis and inflammation|
JS Pearson, C Giogha, S Mühlen, U Nachbur, CLL Pham, Y Zhang, ...
Nature microbiology 2 (4), 1-10, 2017
|In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O: H serotype combinations within and between pathogenic lineages|
DJ Ingle, M Valcanis, A Kuzevski, M Tauschek, M Inouye, T Stinear, ...
Microbial Genomics 2 (7), 2016
|Evolution of atypical enteropathogenic E. coli by repeated acquisition of LEE pathogenicity island variants|
DJ Ingle, M Tauschek, DJ Edwards, DM Hocking, DJ Pickard, ...
Nature microbiology 1 (2), 15010, 2016
|Biofilm formation by and thermal niche and virulence characteristics of Escherichia spp.|
DJ Ingle, O Clermont, D Skurnik, E Denamur, ST Walk, DM Gordon
Applied and environmental microbiology 77 (8), 2695-2700, 2011
|Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward|
MB Schultz, DP Thanh, NT Do Hoan, RR Wick, DJ Ingle, J Hawkey, ...
Microbial genomics 2 (3), 2016
|Dynamics of antimicrobial resistance in intestinal Escherichia coli from children in community settings in South Asia and sub-Saharan Africa|
DJ Ingle, MM Levine, KL Kotloff, KE Holt, RM Robins-Browne
Nature microbiology 3 (9), 1063-1073, 2018
|Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia|
DJ Ingle, M Easton, M Valcanis, T Seemann, JC Kwong, N Stephens, ...
Clinical Infectious Diseases 69 (9), 1535-1544, 2019
|Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era|
DA Williamson, EPF Chow, CL Gorrie, T Seemann, DJ Ingle, N Higgins, ...
Nature communications 10 (1), 1-10, 2019
|Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers|
DJ Ingle, S Nair, H Hartman, PM Ashton, ZA Dyson, M Day, J Freedman, ...
PLOS Neglected Tropical Diseases 13 (9), 2019
|Extensively drug-resistant shigellosis in Australia among men who have sex with men|
D Williamson, D Ingle, B Howden
New England Journal of Medicine 381 (25), 2477-2479, 2019
|Genomic Analysis of Fluoroquinolone-and Tetracycline-Resistant Campylobacter jejuni Sequence Type 6964 in Humans and Poultry, New Zealand, 2014–2016|
NP French, J Zhang, GP Carter, AC Midwinter, PJ Biggs, K Dyet, BJ Gilpin, ...
Emerging infectious diseases 25 (12), 2226, 2019
|Emergence and divergence of major lineages of Shiga-toxin-producing Escherichia coli in Australia|
DJ Ingle, AG da Silva, M Valcanis, SA Ballard, T Seemann, AV Jennison, ...
Microbial genomics 5 (5), 2019
|Risk factors for asymptomatic enteric pathogen detection among men who have sex with men|
DA Williamson, EPF Chow, D Lee, K Maddaford, M Sait, M Easton, ...
Open forum infectious diseases 6 (9), ofz326, 2019
|Prolonged outbreak of multidrug-resistant Shigella sonnei harboring blaCTX-M-27 in Victoria, Australia|
DJ Ingle, P Andersson, M Valcanis, J Barnden, AG da Silva, KA Horan, ...
Antimicrobial Agents and Chemotherapy 64 (12), 2020
|GeneMates: an R package for Detecting Horizontal Gene Co-transfer between Bacteria Using Gene-gene Associations Controlled for Population Structure|
Y Wan, RR Wick, J Zobel, DJ Ingle, M Inouye, KE Holt
BMC Genomics 21, 2020
|Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei|
J Hawkey, K Paranagama, KS Baker, RJ Bengtsson, FX Weill, ...
|Systematic analysis of key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria|
CL Gorrie, AG Da Silva, DJ Ingle, C Higgs, T Seeman, TP Stinear, ...
|Genomic assessment of within-host population variation in Neisseria gonorrhoeae: Implications for gonorrhoea transmission|
MM Ashcroft, EPF Chow, DYJ Lee, V De Petra, M Soumilas, M Tschaepe, ...
|Whole-Genome Sequencing of Salmonella Mississippi and Typhimurium Definitive Type 160, Australia and New Zealand|
L Ford, D Ingle, K Glass, M Veitch, DA Williamson, M Harlock, J Gregory, ...
Emerging infectious diseases 25 (9), 1690, 2019