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Wayne E Clarke
Wayne E Clarke
Verified email at nygenome.org
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Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program
D Taliun, DN Harris, MD Kessler, J Carlson, ZA Szpiech, R Torres, ...
Nature 590 (7845), 290-299, 2021
12812021
Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea
IAP Parkin, C Koh, H Tang, SJ Robinson, S Kagale, WE Clarke, CD Town, ...
Genome biology 15, 1-18, 2014
4922014
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ...
Science 372 (6537), eabf7117, 2021
4152021
High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios
M Byrska-Bishop, US Evani, X Zhao, AO Basile, HJ Abel, AA Regier, ...
Cell 185 (18), 3426-3440. e19, 2022
4082022
The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure
S Kagale, C Koh, J Nixon, V Bollina, WE Clarke, R Tuteja, C Spillane, ...
Nature communications 5 (1), 3706, 2014
3682014
A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid …
WE Clarke, EE Higgins, J Plieske, R Wieseke, C Sidebottom, Y Khedikar, ...
Theoretical and Applied Genetics 129, 1887-1899, 2016
2122016
Polyploid evolution of the Brassicaceae during the Cenozoic era
S Kagale, SJ Robinson, J Nixon, R Xiao, T Huebert, J Condie, D Kessler, ...
The Plant Cell 26 (7), 2777-2791, 2014
1902014
Ancient orphan crop joins modern era: gene-based SNP discovery and mapping in lentil
AG Sharpe, L Ramsay, LA Sanderson, MJ Fedoruk, WE Clarke, R Li, ...
BMC genomics 14, 1-13, 2013
1742013
De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes
MG Links, E Holub, RHY Jiang, AG Sharpe, D Hegedus, E Beynon, ...
BMC genomics 12, 1-12, 2011
1312011
The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp
SA Rolfe, SE Strelkov, MG Links, WE Clarke, SJ Robinson, M Djavaheri, ...
BMC genomics 17, 1-15, 2016
1242016
Curated variation benchmarks for challenging medically relevant autosomal genes
J Wagner, ND Olson, L Harris, J McDaniel, H Cheng, A Fungtammasan, ...
Nature biotechnology 40 (5), 672-680, 2022
1132022
Benchmarking challenging small variants with linked and long reads
J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ...
Cell Genomics 2 (5), 2022
1092022
Monolignol biosynthesis is associated with resistance to Sclerotinia sclerotiorum in Camelina sativa
C Eynck, G Séguin‐Swartz, WE Clarke, IAP Parkin
Molecular plant pathology 13 (8), 887-899, 2012
1062012
Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes
J Ebler, P Ebert, WE Clarke, T Rausch, PA Audano, T Houwaart, Y Mao, ...
Nature genetics 54 (4), 518-525, 2022
982022
An archived activation tagged population of Arabidopsis thalianato facilitate forward genetics approaches
SJ Robinson, LH Tang, BAG Mooney, SJ McKay, WE Clarke, MG Links, ...
BMC Plant Biology 9, 1-15, 2009
792009
Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study
J Foox, SW Tighe, CM Nicolet, JM Zook, M Byrska-Bishop, WE Clarke, ...
Nature biotechnology 39 (9), 1129-1140, 2021
782021
NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium
D Taliun, DN Harris, MD Kessler, J Carlson, ZA Szpiech, R Torres, ...
Harris, DN, 290-299, 2021
742021
The developmental transcriptome atlas of the biofuel crop Camelina sativa
S Kagale, J Nixon, Y Khedikar, A Pasha, NJ Provart, WE Clarke, V Bollina, ...
The plant journal 88 (5), 879-894, 2016
732016
Single-nucleotide polymorphism identification and genotyping in Camelina sativa
R Singh, V Bollina, EE Higgins, WE Clarke, C Eynck, C Sidebottom, ...
Molecular breeding 35, 1-13, 2015
522015
Genomic DNA enrichment using sequence capture microarrays: a novel approach to discover sequence nucleotide polymorphisms (SNP) in Brassica napus L
WE Clarke, IA Parkin, HA Gajardo, DJ Gerhardt, E Higgins, C Sidebottom, ...
PloS one 8 (12), e81992, 2013
482013
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