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Pei Fen Kuan
Pei Fen Kuan
Professor of Applied Mathematics and Statistics, Stony Brook University
Verified email at stonybrook.edu - Homepage
Title
Cited by
Cited by
Year
Dynamic reprogramming of the kinome in response to targeted MEK inhibition in triple-negative breast cancer
JS Duncan, MC Whittle, K Nakamura, AN Abell, AA Midland, ...
Cell 149 (2), 307-321, 2012
8262012
Mutations in isocitrate dehydrogenase 1 and 2 occur frequently in intrahepatic cholangiocarcinomas and share hypermethylation targets with glioblastomas
P Wang, Q Dong, C Zhang, PF Kuan, Y Liu, WR Jeck, JB Andersen, ...
Oncogene 32 (25), 3091-3100, 2013
4342013
Inhibition of lapatinib-induced kinome reprogramming in ERBB2-positive breast cancer by targeting BET family bromodomains
TJ Stuhlmiller, SM Miller, JS Zawistowski, K Nakamura, AS Beltran, ...
Cell reports 11 (3), 390-404, 2015
3332015
Rho directs widespread termination of intragenic and stable RNA transcription
JM Peters, RA Mooney, PF Kuan, JL Rowland, S Keleş, R Landick
Proceedings of the National Academy of Sciences 106 (36), 15406-15411, 2009
2252009
Median absolute deviation to improve hit selection for genome-scale RNAi screens
N Chung, XD Zhang, A Kreamer, L Locco, PF Kuan, S Bartz, PS Linsley, ...
SLAS Discovery 13 (2), 149-158, 2008
2082008
Variation in chromatin accessibility in human kidney cancer links H3K36 methyltransferase loss with widespread RNA processing defects
JM Simon, KE Hacker, D Singh, AR Brannon, JS Parker, M Weiser, TH Ho, ...
Genome research 24 (2), 241-250, 2014
2042014
DiffSplice: the genome-wide detection of differential splicing events with RNA-seq
Y Hu, Y Huang, Y Du, CF Orellana, D Singh, AR Johnson, A Monroy, ...
Nucleic acids research 41 (2), e39-e39, 2013
1772013
HIF1α and HIF2α independently activate SRC to promote melanoma metastases
SC Hanna, B Krishnan, ST Bailey, SJ Moschos, PF Kuan, T Shimamura, ...
The Journal of clinical investigation 123 (5), 2078-2093, 2013
1682013
MERTK receptor tyrosine kinase is a therapeutic target in melanoma
J Schlegel, MJ Sambade, S Sather, SJ Moschos, AC Tan, A Winges, ...
The Journal of clinical investigation 123 (5), 2257-2267, 2013
1502013
A statistical framework for the analysis of ChIP-Seq data
PF Kuan, D Chung, G Pan, JA Thomson, R Stewart, S Keleş
Journal of the American Statistical Association 106 (495), 891-903, 2011
1432011
Metabolomic profiling reveals mitochondrial-derived lipid biomarkers that drive obesity-associated inflammation
BP Sampey, AJ Freemerman, J Zhang, PF Kuan, JA Galanko, ...
PloS one 7 (6), e38812, 2012
1392012
methylGSA: a Bioconductor package and Shiny app for DNA methylation data length bias adjustment in gene set testing
X Ren, PF Kuan
Bioinformatics 35 (11), 1958-1959, 2019
1372019
A statistical framework for Illumina DNA methylation arrays
PF Kuan, S Wang, X Zhou, H Chu
Bioinformatics 26 (22), 2849-2855, 2010
1242010
Epigenome-wide meta-analysis of PTSD across 10 military and civilian cohorts identifies methylation changes in AHRR
AK Smith, A Ratanatharathorn, AX Maihofer, RK Naviaux, AE Aiello, ...
Nature communications 11 (1), 5965, 2020
1112020
Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data
D Chung, PF Kuan, B Li, R Sanalkumar, K Liang, EH Bresnick, C Dewey, ...
PLoS computational biology 7 (7), e1002111, 2011
1022011
An epigenome-wide DNA methylation study of PTSD and depression in World Trade Center responders
PF Kuan, MA Waszczuk, R Kotov, CJ Marsit, G Guffanti, A Gonzalez, ...
Translational psychiatry 7 (6), e1158-e1158, 2017
972017
DNA methylation profiling in the Carolina Breast Cancer Study defines cancer subclasses differing in clinicopathologic characteristics and survival
K Conway, SN Edmiston, R May, PF Kuan, H Chu, C Bryant, CK Tse, ...
Breast cancer research 16, 1-18, 2014
952014
The role of Ect2 nuclear RhoGEF activity in ovarian cancer cell transformation
LP Huff, MJ DeCristo, D Trembath, PF Kuan, M Yim, J Liu, DR Cook, ...
Genes & cancer 4 (11-12), 460-475, 2013
942013
DNA‐methylation profiling distinguishes malignant melanomas from benign nevi
K Conway, SN Edmiston, ZS Khondker, PA Groben, X Zhou, H Chu, ...
Pigment cell & melanoma research 24 (2), 352-360, 2011
912011
Epigenome‐wide association of PTSD from heterogeneous cohorts with a common multi‐site analysis pipeline
A Ratanatharathorn, MP Boks, AX Maihofer, AE Aiello, AB Amstadter, ...
American Journal of Medical Genetics Part B: Neuropsychiatric Genetics 174 …, 2017
812017
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