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Salvador Capella-Gutiérrez
Salvador Capella-Gutiérrez
Barcelona Supercomputing Centre (BSC)
Verified email at bsc.es - Homepage
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Cited by
Cited by
Year
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
S Capella-Gutiérrez, JM Silla-Martínez, T Gabaldón
Bioinformatics 25 (15), 1972-1973, 2009
81102009
Whole-genome analyses resolve early branches in the tree of life of modern birds
ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ...
Science 346 (6215), 1320-1331, 2014
18802014
The genome of melon (Cucumis melo L.)
J Garcia-Mas, A Benjak, W Sanseverino, M Bourgeois, G Mir, ...
Proceedings of the National Academy of Sciences 109 (29), 11872-11877, 2012
7582012
The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)
JC Dohm, AE Minoche, D Holtgräwe, S Capella-Gutiérrez, F Zakrzewski, ...
Nature 505 (7484), 546-549, 2014
6192014
Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida
J Collén, B Porcel, W Carré, SG Ball, C Chaparro, T Tonon, T Barbeyron, ...
Proceedings of the National Academy of Sciences 110 (13), 5247-5252, 2013
3862013
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
RE Green, EL Braun, J Armstrong, D Earl, N Nguyen, G Hickey, ...
Science 346 (6215), 1254449, 2014
3642014
The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima
AD Chipman, DEK Ferrier, C Brena, J Qu, DST Hughes, R Schröder, ...
PLoS biology 12 (11), e1002005, 2014
2512014
PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome
J Huerta-Cepas, S Capella-Gutiérrez, LP Pryszcz, M Marcet-Houben, ...
Nucl. Acids Res. 42 (D1), D897-D902, 2014
2512014
Towards FAIR principles for research software
AL Lamprecht, L Garcia, M Kuzak, C Martinez, R Arcila, E Martin Del Pico, ...
Data Science 3 (1), 37-59, 2020
2462020
Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi
S Capella-Gutiérrez, M Marcet-Houben, T Gabaldon
BMC biology 10, 1-14, 2012
2452012
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing
R Sanchez, F Serra, J Tárraga, I Medina, J Carbonell, L Pulido, ...
Nucleic acids research 39 (suppl_2), W470-W474, 2011
2342011
Standardized benchmarking in the quest for orthologs
AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ...
Nature methods 13 (5), 425-430, 2016
2282016
Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes
A Vlasova, S Capella-Gutiérrez, M Rendón-Anaya, M Hernández-Oñate, ...
Genome biology 17, 1-18, 2016
2182016
The Solanum commersonii Genome Sequence Provides Insights into Adaptation to Stress Conditions and Genome Evolution of Wild Potato Relatives
R Aversano, F Contaldi, MR Ercolano, V Grosso, M Iorizzo, F Tatino, ...
The Plant Cell 27 (4), 954-968, 2015
1992015
PhylomeDB v3. 0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions
J Huerta-Cepas, S Capella-Gutierrez, LP Pryszcz, I Denisov, D Kormes, ...
Nucleic acids research 39 (suppl_1), D556-D560, 2010
1802010
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
F Abascal, A Corvelo, F Cruz, JL Villanueva-Cañas, A Vlasova, ...
Genome biology 17, 1-19, 2016
1652016
Genomic history of the origin and domestication of common bean unveils its closest sister species
M Rendón-Anaya, JM Montero-Vargas, S Saburido-Álvarez, A Vlasova, ...
Genome biology 18, 1-17, 2017
1602017
Ten steps to get started in Genome Assembly and Annotation
VD Del Angel, E Hjerde, L Sterck, S Capella-Gutierrez, C Notredame, ...
F1000Research 7, 2018
1422018
Four simple recommendations to encourage best practices in research software
RC Jiménez, M Kuzak, M Alhamdoosh, M Barker, B Batut, M Borg, ...
F1000Research 6, 2017
1282017
DOME: recommendations for supervised machine learning validation in biology
I Walsh, D Fishman, D Garcia-Gasulla, T Titma, G Pollastri, J Harrow, ...
Nature methods 18 (10), 1122-1127, 2021
1212021
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