Kyle Ellrott
Cited by
Cited by
Comprehensive molecular portraits of human breast tumours
Cancer Genome Atlas Network
Nature 490 (7418), 61, 2012
Comprehensive molecular characterization of human colon and rectal cancer
Cancer Genome Atlas Network
Nature 487 (7407), 330, 2012
The cancer genome atlas pan-cancer analysis project
JN Weinstein, EA Collisson, GB Mills, KRM Shaw, BA Ozenberger, ...
Nature genetics 45 (10), 1113, 2013
The somatic genomic landscape of glioblastoma
CW Brennan, RGW Verhaak, A McKenna, B Campos, H Noushmehr, ...
Cell 155 (2), 462-477, 2013
Comprehensive genomic characterization of squamous cell lung cancers
Cancer Genome Atlas Research Network
Nature 489 (7417), 519, 2012
Comprehensive molecular characterization of clear cell renal cell carcinoma
Cancer Genome Atlas Research Network
Nature 499 (7456), 43-49, 2013
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nature methods 12 (7), 623-630, 2015
Scalable open science approach for mutation calling of tumor exomes using multiple genomic pipelines
K Ellrott, MH Bailey, G Saksena, KR Covington, C Kandoth, C Stewart, ...
Cell systems 6 (3), 271-281. e7, 2018
The UCSC cancer genomics browser: update 2013
M Goldman, B Craft, T Swatloski, K Ellrott, M Cline, M Diekhans, S Ma, ...
Nucleic acids research 41 (D1), D949-D954, 2013
Identifying transcription factor binding sites through Markov chain optimization
K Ellrott, C Yang, FM Sladek, T Jiang
Bioinformatics 18 (suppl_2), S100-S109, 2002
PROSPECT II: protein structure prediction program for genome‐scale applications
D Kim, D Xu, J Guo, K Ellrott, Y Xu
Protein engineering 16 (9), 641-650, 2003
Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas
L Omberg, K Ellrott, Y Yuan, C Kandoth, C Wong, MR Kellen, SH Friend, ...
Nature genetics 45 (10), 1121-1126, 2013
Expansion of the protein repertoire in newly explored environments: human gut microbiome specific protein families
K Ellrott, L Jaroszewski, W Li, JC Wooley, A Godzik
PLoS Comput Biol 6 (6), e1000798, 2010
Structure of the γ-D-glutamyl-L-diamino acid endopeptidase YkfC from Bacillus cereus in complex with L-Ala-γ-D-Glu: insights into substrate recognition by NlpC/P60 cysteine …
Q Xu, P Abdubek, T Astakhova, HL Axelrod, C Bakolitsa, X Cai, D Carlton, ...
Acta Crystallographica Section F: Structural Biology and Crystallization …, 2010
A pan-cancer analysis reveals high-frequency genetic alterations in mediators of signaling by the TGF-β superfamily
A Korkut, S Zaidi, RS Kanchi, S Rao, NR Gough, A Schultz, X Li, ...
Cell systems 7 (4), 422-437. e7, 2018
Global optimization of somatic variant identification in cancer genomes with a global community challenge
PC Boutros, AD Ewing, K Ellrott, TC Norman, KK Dang, Y Hu, MR Kellen, ...
Nature genetics 46 (4), 318-319, 2014
TumorMap: exploring the molecular similarities of cancer samples in an interactive portal
Y Newton, AM Novak, T Swatloski, DC McColl, S Chopra, K Graim, ...
Cancer research 77 (21), e111-e114, 2017
A computational pipeline for protein structure prediction and analysis at genome scale
M Shah, S Passovets, D Kim, K Ellrott, L Wang, I Vokler, P LoCascio, D Xu, ...
Bioinformatics 19 (15), 1985-1996, 2003
PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction
J Guo, K Ellrott, WJ Chung, D Xu, S Passovets, Y Xu
Nucleic acids research 32 (suppl_2), W522-W525, 2004
Structure of a membrane-attack complex/perforin (MACPF) family protein from the human gut symbiont Bacteroides thetaiotaomicron
Q Xu, P Abdubek, T Astakhova, HL Axelrod, C Bakolitsa, X Cai, D Carlton, ...
Acta Crystallographica Section F: Structural Biology and Crystallization …, 2010
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