Steven Salzberg
Steven Salzberg
Bloomberg Distinguished Professor, Johns Hopkins University
Verified email at jhu.edu - Homepage
TitleCited byYear
Fast gapped-read alignment with Bowtie 2
B Langmead, SL Salzberg
Nature methods 9 (4), 357, 2012
178952012
The sequence of the human genome
JC Venter, EW Adams, M.D., Myers, PW Li, RJ Mural, et al.
Science 291 (5507), 1304-1351, 2001
165002001
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
B Langmead, C Trapnell, M Pop, SL Salzberg
Genome biology 10 (3), R25, 2009
156952009
TopHat: discovering splice junctions with RNA-Seq
C Trapnell, L Pachter, SL Salzberg
Bioinformatics 25 (9), 1105-1111, 2009
95562009
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
C Trapnell, BA Williams, G Pertea, A Mortazavi, G Kwan, MJ Van Baren, ...
Nature biotechnology 28 (5), 511, 2010
94682010
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
GI Arabidopsis
Nature 408 (6814), 796, 2000
90622000
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
D Kim, G Pertea, C Trapnell, H Pimentel, R Kelley, SL Salzberg
Genome biology 14 (4), R36, 2013
77932013
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ...
Nature protocols 7 (3), 562-578, 2012
77232012
Genome sequence of the human malaria parasite Plasmodium falciparum
MJ Gardner, N Hall, E Fung, O White, M Berriman, RW Hyman, JM Carlton, ...
Nature 419 (6906), 498-511, 2002
44982002
FLASH: fast length adjustment of short reads to improve genome assemblies
T Magoč, SL Salzberg
Bioinformatics 27 (21), 2957-2963, 2011
40862011
Versatile and open software for comparing large genomes
S Kurtz, A Phillippy, AL Delcher, M Smoot, M Shumway, C Antonescu, ...
Genome biology 5 (2), R12, 2004
34832004
HISAT: a fast spliced aligner with low memory requirements
D Kim, B Langmead, SL Salzberg
Nature methods 12 (4), 357-360, 2015
34312015
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
science 309 (5740), 1559-1563, 2005
32192005
Improved microbial gene identification with GLIMMER
AL Delcher, D Harmon, S Kasif, O White, SL Salzberg
Nucleic acids research 27 (23), 4636-4641, 1999
24581999
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi
CM Fraser, S Casjens, WM Huang, GG Sutton, R Clayton, R Lathigra, ...
Nature 390 (6660), 580-586, 1997
22191997
The genome sequence of the malaria mosquito Anopheles gambiae
RA Holt, GM Subramanian, A Halpern, GG Sutton, R Charlab, ...
science 298 (5591), 129-149, 2002
21522002
Identifying bacterial genes and endosymbiont DNA with Glimmer
AL Delcher, KA Bratke, EC Powers, SL Salzberg
Bioinformatics 23 (6), 673-679, 2007
21102007
Evolution of genes and genomes on the Drosophila phylogeny
Drosophila 12 Genomes Consortium
Nature 450 (7167), 203, 2007
18352007
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
JF Heidelberg, JA Eisen, WC Nelson, RA Clayton, ML Gwinn, RJ Dodson, ...
Nature 406 (6795), 477-483, 2000
17982000
Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima
KE Nelson, RA Clayton, SR Gill, ML Gwinn, RJ Dodson, DH Haft, ...
Nature 399 (6734), 323-329, 1999
16491999
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