| Depth: a web server to compute depth, cavity sizes, detect potential small-molecule ligand-binding cavities and predict the pKa of ionizable residues in proteins KP Tan, TB Nguyen, S Patel, R Varadarajan, MS Madhusudhan Nucleic acids research 41 (W1), W314-W321, 2013 | 208 | 2013 |
| ThermoMutDB: a thermodynamic database for missense mutations JS Xavier, TB Nguyen, M Karmarkar, S Portelli, PM Rezende, JPL Velloso, ... Nucleic acids research 49 (D1), D475-D479, 2021 | 81 | 2021 |
| Systematic evaluation of computational tools to predict the effects of mutations on protein stability in the absence of experimental structures Q Pan, TB Nguyen, DB Ascher, DEV Pires Briefings in Bioinformatics 23 (2), bbac025, 2022 | 36 | 2022 |
| Unraveling the structural basis for the unusually rich association of human leukocyte antigen DQ2. 5 with class-II-associated invariant chain peptides TB Nguyen, P Jayaraman, E Bergseng, MS Madhusudhan, CY Kim, ... Journal of Biological Chemistry 292 (22), 9218-9228, 2017 | 25 | 2017 |
| Germline variants in tumor suppressor FBXW7 lead to impaired ubiquitination and a neurodevelopmental syndrome SEM Stephenson, G Costain, LER Blok, MA Silk, TB Nguyen, X Dong, ... The American Journal of Human Genetics 109 (4), 601-617, 2022 | 23 | 2022 |
| SAP domain forms a flexible part of DNA aperture in Ku70/80 A Hnízda, P Tesina, TB Nguyen, Z Kukačka, L Kater, AK Chaplin, ... The FEBS Journal 288 (14), 4382-4393, 2021 | 22 | 2021 |
| Structure-guided machine learning prediction of drug resistance mutations in Abelson 1 kinase Y Zhou, S Portelli, M Pat, CHM Rodrigues, TB Nguyen, DEV Pires, ... Computational and Structural Biotechnology Journal 19, 5381-5391, 2021 | 15 | 2021 |
| mmCSM-NA: accurately predicting effects of single and multiple mutations on protein–nucleic acid binding affinity TB Nguyen, Y Myung, AGC de Sá, DEV Pires, DB Ascher NAR genomics and bioinformatics 3 (4), lqab109, 2021 | 13 | 2021 |
| Definition of the immune evasion-replication interface of rabies virus P protein J Zhan, AR Harrison, S Portelli, TB Nguyen, I Kojima, S Zheng, F Yan, ... PLoS Pathogens 17 (7), e1009729, 2021 | 13 | 2021 |
| A bias of Asparagine to Lysine mutations in SARS-CoV-2 outside the receptor binding domain affects protein flexibility JC Boer, Q Pan, JK Holien, TB Nguyen, DB Ascher, M Plebanski Frontiers in immunology 13, 954435, 2022 | 9 | 2022 |
| kinCSM: Using graph‐based signatures to predict small molecule CDK2 inhibitors Y Zhou, R Al‐Jarf, A Alavi, TB Nguyen, CHM Rodrigues, DEV Pires, ... Protein Science 31 (11), e4453, 2022 | 7 | 2022 |
| CSM-carbohydrate: protein-carbohydrate binding affinity prediction and docking scoring function TB Nguyen, DEV Pires, DB Ascher Briefings in Bioinformatics 23 (1), bbab512, 2022 | 6 | 2022 |
| Computational design of macrocyclic binders of S100B (ββ): novel peptide theranostics S Kannan, PGA Aronica, TB Nguyen, J Li, CS Verma Molecules 26 (3), 721, 2021 | 5 | 2021 |
| Characterization on the oncogenic effect of the missense mutations of p53 via machine learning Q Pan, S Portelli, TB Nguyen, DB Ascher Briefings in Bioinformatics 25 (1), bbad428, 2024 | 3 | 2024 |
| Targeting the Plasmodium falciparum UCHL3 ubiquitin hydrolase using chemically constrained peptides HR King, M Bycroft, TB Nguyen, G Kelly, AA Vinogradov, PJE Rowling, ... Proceedings of the National Academy of Sciences 121 (21), e2322923121, 2024 | 2 | 2024 |
| A novel IGHMBP2 variant and clinical diversity in Vietnamese SMARD1 and CMT2S patients VK Tran, MH Cao, TTH Nguyen, PT Le, HA Tran, DC Vu, HT Nguyen, ... Frontiers in pediatrics 12, 1165492, 2024 | 2 | 2024 |
| Evaluation of enzyme activity predictions for variants of unknown significance in Arylsulfatase A S Jain, M Trinidad, TB Nguyen, K Jones, SD Neto, F Ge, A Glagovsky, ... bioRxiv, 2024 | 1 | 2024 |
| Mechanisms of biased agonism by Gαi/o-biased stapled peptide agonists of the relaxin-3 receptor T Jayakody, A Inoue, S Kannan, G Nakamura, K Kawakami, K Mendis, ... Science Signaling 17 (823), eabl5880, 2024 | 1 | 2024 |
| LEGO-CSM: a tool for functional characterization of proteins TB Nguyen, AGC de Sá, CHM Rodrigues, DEV Pires, DB Ascher Bioinformatics 39 (7), btad402, 2023 | 1 | 2023 |
| Can glycosylation mask the detection of MHC expressing p53 peptides by T cell receptors? TB Nguyen, DP Lane, CS Verma Biomolecules 11 (7), 1056, 2021 | 1 | 2021 |
David AscherUniversity of Queensland; Baker InstituteVerified email at uq.edu.au
