Natalie Fedorova Abrams
Natalie Fedorova Abrams
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The COG database: an updated version includes eukaryotes
RL Tatusov, ND Fedorova, JD Jackson, AR Jacobs, B Kiryutin, EV Koonin, ...
BMC bioinformatics 4, 1-14, 2003
The COG database: new developments in phylogenetic classification of proteins from complete genomes
RL Tatusov, DA Natale, IV Garkavtsev, TA Tatusova, UT Shankavaram, ...
Nucleic acids research 29 (1), 22-28, 2001
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus
WC Nierman, A Pain, MJ Anderson, JR Wortman, HS Kim, J Arroyo, ...
Nature 438 (7071), 1151-1156, 2005
Genome sequencing and analysis of Aspergillus oryzae
M Machida, K Asai, M Sano, T Tanaka, T Kumagai, G Terai, KI Kusumoto, ...
Nature 438 (7071), 1157-1161, 2005
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
EV Koonin, ND Fedorova, JD Jackson, AR Jacobs, DM Krylov, ...
Genome biology 5, 1-28, 2004
CDD: a curated Entrez database of conserved domain alignments
A Marchler-Bauer, JB Anderson, C DeWeese-Scott, ND Fedorova, ...
Nucleic acids research 31 (1), 383-387, 2003
SMURF: genomic mapping of fungal secondary metabolite clusters
N Khaldi, FT Seifuddin, G Turner, D Haft, WC Nierman, KH Wolfe, ...
Fungal Genetics and Biology 47 (9), 736-741, 2010
Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus
ND Fedorova, N Khaldi, VS Joardar, R Maiti, P Amedeo, MJ Anderson, ...
PLoS genetics 4 (4), e1000046, 2008
Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum
MA Van Den Berg, R Albang, K Albermann, JH Badger, JM Daran, ...
Nature biotechnology 26 (10), 1161-1168, 2008
Transcriptional regulation of chemical diversity in Aspergillus fumigatus by LaeA
RM Perrin, ND Fedorova, JW Bok, RA Cramer Jr, JR Wortman, HS Kim, ...
PLoS pathogens 3 (4), e50, 2007
Sodium ion cycle in bacterial pathogens: evidence from cross-genome comparisons
CC Häse, ND Fedorova, MY Galperin, PA Dibrov
Microbiology and Molecular Biology Reviews 65 (3), 353-370, 2001
Sub-telomere directed gene expression during initiation of invasive aspergillosis
A McDonagh, ND Fedorova, J Crabtree, Y Yu, S Kim, D Chen, O Loss, ...
PLoS pathogens 4 (9), e1000154, 2008
MMDB: Entrez's 3D-structure database
J Chen, JB Anderson, C DeWeese-Scott, ND Fedorova, LY Geer, S He, ...
Nucleic Acids Research 31 (1), 474-477, 2003
Beyond aflatoxin: four distinct expression patterns and functional roles associated with Aspergillus flavus secondary metabolism gene clusters
DR Georgianna, ND Fedorova, JL Burroughs, AL Dolezal, JW Bok, ...
Molecular plant pathology 11 (2), 213-226, 2010
Systematic and searchable classification of cytochrome P450 proteins encoded by fungal and oomycete genomes
V Moktali, J Park, ND Fedorova-Abrams, B Park, J Choi, YH Lee, S Kang
BMC genomics 13, 1-13, 2012
The pH-Responsive PacC Transcription Factor of Aspergillus fumigatus Governs Epithelial Entry and Tissue Invasion during Pulmonary Aspergillosis
M Bertuzzi, M Schrettl, L Alcazar-Fuoli, TC Cairns, A Munoz, LA Walker, ...
PLoS pathogens 10 (10), e1004413, 2014
Tight control of mycotoxin biosynthesis gene expression in Aspergillus flavus by temperature as revealed by RNA-Seq
J Yu, ND Fedorova, BG Montalbano, D Bhatnagar, TE Cleveland, ...
FEMS microbiology letters 322 (2), 145-149, 2011
Comparative analysis of programmed cell death pathways in filamentous fungi
ND Fedorova, JH Badger, GD Robson, JR Wortman, WC Nierman
BMC genomics 6, 1-14, 2005
Potential of Aspergillus flavus genomics for applications in biotechnology
TE Cleveland, J Yu, N Fedorova, D Bhatnagar, GA Payne, WC Nierman, ...
Trends in biotechnology 27 (3), 151-157, 2009
Continuing Evolution of Burkholderia mallei Through Genome Reduction and Large-Scale Rearrangements
L Losada, CM Ronning, D DeShazer, D Woods, N Fedorova, ...
Genome biology and evolution 2, 102-116, 2010
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