Philip Hugenholtz
Philip Hugenholtz
Australian Centre for Ecogenomics, SCMB, The University of Queensland
Verified email at uq.edu.au - Homepage
Title
Cited by
Cited by
Year
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
TZ DeSantis, P Hugenholtz, N Larsen, M Rojas, EL Brodie, K Keller, ...
Applied and environmental microbiology 72 (7), 5069-5072, 2006
81062006
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ...
The ISME journal 6 (3), 610-618, 2012
32582012
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
P Hugenholtz, BM Goebel, NR Pace
Journal of bacteriology 180 (18), 4765-4774, 1998
28791998
Community structure and metabolism through reconstruction of microbial genomes from the environment
GW Tyson, J Chapman, P Hugenholtz, EE Allen, RJ Ram, PM Richardson, ...
Nature 428 (6978), 37-43, 2004
23392004
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
DH Parks, M Imelfort, CT Skennerton, P Hugenholtz, GW Tyson
Genome research 25 (7), 1043-1055, 2015
23162015
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
T Huber, G Faulkner, P Hugenholtz
Bioinformatics 20 (14), 2317-2319, 2004
17372004
Comparative metagenomics of microbial communities
SG Tringe, C Von Mering, A Kobayashi, AA Salamov, K Chen, HW Chang, ...
Science 308 (5721), 554-557, 2005
17032005
Defining the core Arabidopsis thaliana root microbiome
DS Lundberg, SL Lebeis, SH Paredes, S Yourstone, J Gehring, S Malfatti, ...
Nature 488 (7409), 86-90, 2012
15282012
Insights into the phylogeny and coding potential of microbial dark matter
C Rinke, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, ...
Nature 499 (7459), 431-437, 2013
15152013
STAMP: statistical analysis of taxonomic and functional profiles
DH Parks, GW Tyson, P Hugenholtz, RG Beiko
Bioinformatics 30 (21), 3123-3124, 2014
14622014
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
V Kunin, A Engelbrektson, H Ochman, P Hugenholtz
Environmental microbiology 12 (1), 118-123, 2010
12842010
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
F Warnecke, P Luginbühl, N Ivanova, M Ghassemian, TH Richardson, ...
Nature 450 (7169), 560-565, 2007
12682007
The minimum information about a genome sequence (MIGS) specification
D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ...
Nature biotechnology 26 (5), 541-547, 2008
11502008
NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes
TZ DeSantis, P Hugenholtz, K Keller, EL Brodie, N Larsen, YM Piceno, ...
Nucleic acids research 34 (suppl_2), W394-W399, 2006
10692006
Novel division level bacterial diversity in a Yellowstone hot spring
P Hugenholtz, C Pitulle, KL Hershberger, NR Pace
Journal of bacteriology 180 (2), 366-376, 1998
10421998
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
D Wu, P Hugenholtz, K Mavromatis, R Pukall, E Dalin, NN Ivanova, ...
Nature 462 (7276), 1056-1060, 2009
9582009
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
M Albertsen, P Hugenholtz, A Skarshewski, KL Nielsen, GW Tyson, ...
Nature biotechnology 31 (6), 533-538, 2013
9382013
CRISPR—a widespread system that provides acquired resistance against phages in bacteria and archaea
R Sorek, V Kunin, P Hugenholtz
Nature Reviews Microbiology 6 (3), 181-186, 2008
8662008
Microbial diversity in a hydrocarbon-and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation
MA Dojka, P Hugenholtz, SK Haack, NR Pace
Applied and Environmental Microbiology 64 (10), 3869-3877, 1998
8481998
Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantitation
GR Crocetti, P Hugenholtz, PL Bond, A Schuler, J Keller, D Jenkins, ...
Applied and environmental microbiology 66 (3), 1175-1182, 2000
8402000
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Articles 1–20